MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.3 nTPM
HPA Brain:32.3 nTPM
GTEx:45.3 nTPM
FANTOM5:20.9 Scaled Tags Per Million
Pig:84.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
2219 Male, age 76, both hemispheres 27.8
1870 Female, age 42, unknown 27.3
2411 Female, age 72, unknown 27.1
2019 Male, age 18, unknown 25.6
1830 Male, age 51, unknown 25.2
2828 Female, age 72, unknown 25.1
1833 Male, age 53, unknown 23.7
2586 Male, age 75, left hemisphere 23.6
2666 Male, age 74, left hemisphere 21.8
1827 Male, age 72, unknown 19.8
Dorsal raphe nucleus
nTPM: 27.8
2750 Male, age 76, both hemispheres 34.7
2298 Female, age 72, unknown 27.9
1828 Male, age 53, unknown 27.7
2047 Male, age 72, unknown 25.1
2016 Female, age 72, unknown 23.8
Inferior colliculus
nTPM: 25.7
2097 Female, age 72, unknown 30.7
1848 Female, age 42, unknown 26.1
2849 Male, age 72, unknown 23.5
1890 Male, age 53, unknown 22.5
Median raphe nucleus
nTPM: 32.3
2220 Male, age 76, midline 32.3
Periaquaductal grey, anterior
nTPM: 24.6
2502 Female, age 75, unknown 27.5
1947 Male, age 18, unknown 24.6
1795 Male, age 51, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 24.6
2850 Male, age 76, both hemispheres 27.2
1840 Male, age 53, unknown 26.8
2464 Female, age 72, unknown 23.3
1831 Male, age 72, unknown 21.3
Periaquaductal grey, lateral
nTPM: 25.3
2272 Male, age 74, both hemispheres 29.1
2053 Male, age 18, unknown 26.3
2140 Male, age 76, both hemispheres 20.3
Pretectal area
nTPM: 26.2
2224 Female, age 72, unknown 31.6
1815 Male, age 53, unknown 30.8
2667 Female, age 75, unknown 30.3
1817 Female, age 42, unknown 29.0
2316 Male, age 76, right hemisphere 27.8
1816 Male, age 51, unknown 27.3
2007 Male, age 72, unknown 26.6
2273 Male, age 74, both hemispheres 25.7
2825 Male, age 18, unknown 22.9
2407 Male, age 75, both hemispheres 19.4
1944 Female, age 72, unknown 16.5
Red nucleus
nTPM: 27.9
1821 Female, age 72, unknown 33.7
2823 Male, age 76, right hemisphere 32.6
2227 Male, age 72, unknown 30.0
2503 Female, age 72, unknown 30.0
1904 Male, age 53, unknown 29.3
2769 Male, age 72, unknown 29.3
1954 Female, age 42, unknown 28.8
2785 Male, age 18, unknown 28.0
1865 Male, age 51, unknown 27.3
2725 Female, age 75, unknown 26.2
2588 Male, age 74, left hemisphere 22.9
2584 Male, age 75, left hemisphere 17.1
Substantia nigra
nTPM: 25.6
2241 Male, age 72, unknown 35.2
1916 Female, age 42, unknown 34.6
1851 Male, age 51, unknown 29.2
1889 Female, age 72, unknown 28.5
2665 Male, age 74, both hemispheres 26.5
2699 Male, age 18, unknown 25.8
1941 Male, age 53, unknown 20.6
2590 Female, age 75, unknown 19.7
2583 Male, age 75, right hemisphere 18.5
2409 Female, age 72, unknown 17.5
Superior colliculus
nTPM: 25.3
1913 Female, age 42, unknown 30.5
2587 Male, age 74, left hemisphere 26.4
1995 Male, age 72, unknown 25.5
2668 Female, age 75, unknown 25.4
2087 Female, age 72, unknown 25.3
1839 Male, age 51, unknown 24.5
1895 Male, age 76, right hemisphere 24.5
2261 Male, age 18, unknown 24.5
1796 Male, age 53, unknown 23.7
2664 Male, age 75, both hemispheres 23.2
Ventral tegmental area
nTPM: 27.4
2218 Male, age 76, both hemispheres 31.2
2021 Male, age 53, unknown 29.7
1915 Female, age 42, unknown 28.6
1942 Male, age 51, unknown 25.1
2223 Female, age 72, unknown 25.1
2410 Female, age 72, unknown 25.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 45.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.3
Samples: 183

Max nTPM: 96.5
Min nTPM: 19.4
Std nTPM: 12.7
Median nTPM: 42.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 96.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 84.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.6
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 79.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 79.2
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 77.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 76.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 71.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 71.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 66.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 20.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.9
FF:10158-103A5 76 years, female 20.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.1
Samples: 4

Max nTPM: 104.9
Min nTPM: 66.3
Sample A Female 104.9
Sample B Female 72.4
Sample C Male 84.8
Sample D Male 66.3
Midbrain
nTPM: 79.6
Samples: 4

Max nTPM: 98.5
Min nTPM: 59.4
Sample A Female 98.5
Sample B Female 85.5
Sample C Male 75.1
Sample D Male 59.4
Periaqueductal gray
nTPM: 70.7
Samples: 3

Max nTPM: 79.9
Min nTPM: 59.5
Sample B Female 72.7
Sample C Male 79.9
Sample D Male 59.5
Superior colliculi
nTPM: 84.1
Samples: 4

Max nTPM: 100.1
Min nTPM: 74.9
Sample A Female 100.1
Sample B Female 78.7
Sample C Male 82.8
Sample D Male 74.9

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