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  • GPRC5B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:155.3 nTPM
HPA Brain:585.7 nTPM
GTEx:155.3 nTPM
FANTOM5:513.7 Scaled Tags Per Million
Pig:183.6 nTPM
Mouse:58.5 nTPM
Allen mouse:8.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

585.7
Sample id Sample description nTPM
Amygdala
nTPM: 585.7
2814 Male, age 76, right hemisphere 635.6
2514 Male, age 75, right hemisphere 620.3
2695 Female, age 67, right hemisphere 605.6
1987 Female, age 91, left hemisphere 548.2
2517 Female, age 94, left hemisphere 518.7
Basal amygdala
nTPM: 469.6
2609 Male, age 75, right hemisphere 656.0
2110 Male, age 80, left hemisphere 514.9
1955 Male, age 76, both hemispheres 480.4
2685 Female, age 94, left hemisphere 440.0
2243 Female, age 91, right hemisphere 391.1
2827 Female, age 67, right hemisphere 335.1
Central amygdala
nTPM: 538.9
2515 Male, age 75, right hemisphere 643.7
1905 Male, age 76, both hemispheres 616.3
2826 Female, age 94, left hemisphere 515.5
2239 Male, age 80, left hemisphere 465.7
2701 Female, age 91, right hemisphere 453.2
Corticomedial amygdala
nTPM: 408.3
2428 Male, age 75, right hemisphere 630.0
2429 Female, age 94, left hemisphere 403.7
2829 Male, age 80, left hemisphere 391.7
2240 Male, age 76, both hemispheres 372.6
2242 Female, age 91, right hemisphere 366.7
2535 Female, age 67, right hemisphere 284.9
Lateral amygdala
nTPM: 524.9
2516 Male, age 75, right hemisphere 703.4
1883 Male, age 76, both hemispheres 570.4
2256 Male, age 80, left hemisphere 512.7
2255 Female, age 91, right hemisphere 482.5
2830 Female, age 67, right hemisphere 443.2
2534 Female, age 94, left hemisphere 437.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

155.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 155.3
Samples: 181

Max nTPM: 397.2
Min nTPM: 43.7
Std nTPM: 56.3
Median nTPM: 145.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 397.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 335.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 320.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 295.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 289.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 277.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 271.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 268.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 267.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 261.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 261.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 256.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 245.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 235.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 235.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 233.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 233.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 224.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 222.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 222.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 219.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 219.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 215.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 214.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 211.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 210.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 209.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 207.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 206.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 205.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 203.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 202.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 201.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 200.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 199.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 198.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 195.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 195.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 195.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 193.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 190.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 189.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 187.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 187.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 187.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 185.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 182.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 182.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 181.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 181.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 180.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 178.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 178.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 177.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 176.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 175.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 173.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 173.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 172.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 171.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 171.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 171.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 170.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 170.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 170.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 167.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 167.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 166.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 166.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 162.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 161.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 161.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 160.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 159.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 158.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 158.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 157.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 156.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 156.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 154.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 153.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 153.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 152.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 151.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 151.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 150.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 148.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 146.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 145.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 145.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 144.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 144.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 143.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 142.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 142.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 142.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 141.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 140.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 140.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 140.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 140.4
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 140.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 139.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 138.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 137.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 135.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 135.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 135.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 135.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 135.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 133.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 132.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 130.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 130.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 129.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 129.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 128.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 128.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 127.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 125.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 125.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 124.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 123.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 123.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 120.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 120.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 119.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 118.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 117.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 117.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 116.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 116.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 115.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 114.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 114.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 113.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 112.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 112.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 112.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 111.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 111.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 109.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 107.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 105.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 105.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 104.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 102.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 102.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 102.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 101.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 99.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 99.6
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 99.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 99.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 98.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 97.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 95.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 95.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 94.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 93.7
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 92.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 90.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 89.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 87.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 85.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 82.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 81.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 80.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 77.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 76.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 75.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 70.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 67.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 64.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 58.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 57.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 43.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

513.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 513.7
FF:10151-102I7 76 years, female 513.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.6
Pig sample Sample description nTPM
Amygdala
nTPM: 183.7
Samples: 4

Max nTPM: 223.8
Min nTPM: 151.9
Sample A Female 175.0
Sample B Female 223.8
Sample C Male 184.0
Sample D Male 151.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 58.6
Samples: 4

Max nTPM: 73.5
Min nTPM: 50.0
Sample A Male 53.6
Sample B Male 50.0
Sample C Female 73.5
Sample D Female 57.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.4
68633038 Antisense, RP_050125_02_C10, Mouse strain C57BL/6J (56 days, male) 8.7
71836881 Antisense, RP_051017_02_E11, Mouse strain C57BL/6J (56 days, male) 8.1

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