MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.3 nTPM
HPA Brain:49.8 nTPM
GTEx:61.3 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:26.0 nTPM
Mouse:41.8 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.9
2666 Male, age 74, left hemisphere 53.2
1870 Female, age 42, unknown 48.6
2019 Male, age 18, unknown 47.2
1830 Male, age 51, unknown 45.7
1833 Male, age 53, unknown 45.7
2586 Male, age 75, left hemisphere 45.6
2411 Female, age 72, unknown 44.9
2828 Female, age 72, unknown 43.3
1827 Male, age 72, unknown 39.9
2219 Male, age 76, both hemispheres 34.6
Dorsal raphe nucleus
nTPM: 40.4
2750 Male, age 76, both hemispheres 43.1
2298 Female, age 72, unknown 42.1
1828 Male, age 53, unknown 39.9
2016 Female, age 72, unknown 38.4
2047 Male, age 72, unknown 38.3
Inferior colliculus
nTPM: 40.9
1848 Female, age 42, unknown 43.6
2849 Male, age 72, unknown 42.7
2097 Female, age 72, unknown 39.4
1890 Male, age 53, unknown 38.0
Median raphe nucleus
nTPM: 49.5
2220 Male, age 76, midline 49.5
Periaquaductal grey, anterior
nTPM: 37.3
1947 Male, age 18, unknown 39.6
2502 Female, age 75, unknown 36.3
1795 Male, age 51, unknown 35.9
Periaquaductal grey, dorsal
nTPM: 34.7
2464 Female, age 72, unknown 37.6
1831 Male, age 72, unknown 34.3
1840 Male, age 53, unknown 34.0
2850 Male, age 76, both hemispheres 32.9
Periaquaductal grey, lateral
nTPM: 33.7
2053 Male, age 18, unknown 34.3
2272 Male, age 74, both hemispheres 34.2
2140 Male, age 76, both hemispheres 32.6
Pretectal area
nTPM: 41.4
1817 Female, age 42, unknown 50.1
2007 Male, age 72, unknown 47.9
2825 Male, age 18, unknown 43.0
2224 Female, age 72, unknown 42.9
2407 Male, age 75, both hemispheres 42.7
2667 Female, age 75, unknown 42.0
1815 Male, age 53, unknown 41.2
2316 Male, age 76, right hemisphere 39.8
1944 Female, age 72, unknown 37.6
1816 Male, age 51, unknown 36.3
2273 Male, age 74, both hemispheres 32.3
Red nucleus
nTPM: 49.8
1821 Female, age 72, unknown 55.4
1865 Male, age 51, unknown 55.0
1904 Male, age 53, unknown 54.8
1954 Female, age 42, unknown 54.1
2227 Male, age 72, unknown 51.2
2769 Male, age 72, unknown 50.4
2823 Male, age 76, right hemisphere 48.9
2785 Male, age 18, unknown 47.6
2725 Female, age 75, unknown 45.8
2503 Female, age 72, unknown 45.4
2588 Male, age 74, left hemisphere 45.1
2584 Male, age 75, left hemisphere 43.9
Substantia nigra
nTPM: 39.8
2665 Male, age 74, both hemispheres 47.8
1851 Male, age 51, unknown 42.9
1941 Male, age 53, unknown 42.0
2699 Male, age 18, unknown 41.8
2583 Male, age 75, right hemisphere 41.7
1889 Female, age 72, unknown 41.3
1916 Female, age 42, unknown 39.1
2590 Female, age 75, unknown 37.5
2241 Male, age 72, unknown 33.6
2409 Female, age 72, unknown 30.7
Superior colliculus
nTPM: 41.1
1913 Female, age 42, unknown 52.6
2668 Female, age 75, unknown 46.7
2587 Male, age 74, left hemisphere 46.2
1995 Male, age 72, unknown 44.5
1839 Male, age 51, unknown 40.3
2664 Male, age 75, both hemispheres 38.0
1895 Male, age 76, right hemisphere 36.7
2087 Female, age 72, unknown 36.4
1796 Male, age 53, unknown 35.8
2261 Male, age 18, unknown 33.6
Ventral tegmental area
nTPM: 41.0
2223 Female, age 72, unknown 46.0
2410 Female, age 72, unknown 43.1
2021 Male, age 53, unknown 42.7
1915 Female, age 42, unknown 41.6
1942 Male, age 51, unknown 39.3
2218 Male, age 76, both hemispheres 33.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 61.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.3
Samples: 183

Max nTPM: 140.1
Min nTPM: 27.5
Std nTPM: 16.0
Median nTPM: 57.6
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 140.1
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 115.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 114.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 104.9
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 95.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 93.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 91.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 90.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 90.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 88.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 87.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.9
FF:10158-103A5 76 years, female 67.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 26.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.8
Samples: 4

Max nTPM: 24.3
Min nTPM: 16.3
Sample A Female 22.5
Sample B Female 24.3
Sample C Male 16.3
Sample D Male 20.2
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 30.5
Min nTPM: 12.1
Sample A Female 30.5
Sample B Female 18.2
Sample C Male 14.4
Sample D Male 12.1
Periaqueductal gray
nTPM: 16.8
Samples: 3

Max nTPM: 18.0
Min nTPM: 15.4
Sample B Female 15.4
Sample C Male 16.9
Sample D Male 18.0
Superior colliculi
nTPM: 26.0
Samples: 4

Max nTPM: 46.4
Min nTPM: 16.4
Sample A Female 24.6
Sample B Female 46.4
Sample C Male 16.4
Sample D Male 16.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 41.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.8
Samples: 4

Max nTPM: 43.5
Min nTPM: 40.5
Sample A Male 41.0
Sample B Male 40.5
Sample C Female 42.2
Sample D Female 43.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68633152 Antisense, RP_050125_02_E03, Mouse strain C57BL/6J (56 days, male) 0.7

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