BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1222.8 nTPM
HPA Brain:640.7 nTPM
GTEx:1222.8 nTPM
FANTOM5:95.8 Scaled Tags Per Million
Macaque:150.7 nTPM
Mouse:506.3 nTPM
Pig:5.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 640.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 623.6
2586 Male, age 75, left hemisphere 850.3
2666 Male, age 74, left hemisphere 674.0
2828 Female, age 72, unknown 659.2
2411 Female, age 72, unknown 644.0
2019 Male, age 18, unknown 639.6
1827 Male, age 72, unknown 596.7
1830 Male, age 51, unknown 587.8
1870 Female, age 42, unknown 575.0
1833 Male, age 53, unknown 553.6
2219 Male, age 76, both hemispheres 455.5
Dorsal raphe nucleus
nTPM: 563.1
2298 Female, age 72, unknown 618.2
2016 Female, age 72, unknown 588.6
2750 Male, age 76, both hemispheres 565.7
1828 Male, age 53, unknown 537.4
2047 Male, age 72, unknown 505.3
Inferior colliculus
nTPM: 535.1
2097 Female, age 72, unknown 586.2
1890 Male, age 53, unknown 533.9
2849 Male, age 72, unknown 515.4
1848 Female, age 42, unknown 504.8
Median raphe nucleus
nTPM: 552.0
2220 Male, age 76, midline 552.0
Periaquaductal grey, anterior
nTPM: 640.7
2502 Female, age 75, unknown 751.2
1795 Male, age 51, unknown 607.3
1947 Male, age 18, unknown 563.4
Periaquaductal grey, dorsal
nTPM: 533.2
1840 Male, age 53, unknown 576.7
1831 Male, age 72, unknown 564.8
2464 Female, age 72, unknown 544.4
2850 Male, age 76, both hemispheres 446.9
Periaquaductal grey, lateral
nTPM: 556.3
2053 Male, age 18, unknown 611.6
2272 Male, age 74, both hemispheres 531.3
2140 Male, age 76, both hemispheres 526.1
Pretectal area
nTPM: 549.0
2407 Male, age 75, both hemispheres 630.0
2316 Male, age 76, right hemisphere 627.4
2825 Male, age 18, unknown 576.0
1815 Male, age 53, unknown 568.4
2273 Male, age 74, both hemispheres 556.8
2007 Male, age 72, unknown 556.3
1817 Female, age 42, unknown 546.3
1816 Male, age 51, unknown 537.9
2224 Female, age 72, unknown 518.8
1944 Female, age 72, unknown 478.6
2667 Female, age 75, unknown 442.4
Red nucleus
nTPM: 628.6
2503 Female, age 72, unknown 744.2
2584 Male, age 75, left hemisphere 718.4
2588 Male, age 74, left hemisphere 687.4
1904 Male, age 53, unknown 666.2
1865 Male, age 51, unknown 642.5
2227 Male, age 72, unknown 638.0
2769 Male, age 72, unknown 617.3
2725 Female, age 75, unknown 597.5
2785 Male, age 18, unknown 582.3
1821 Female, age 72, unknown 568.8
1954 Female, age 42, unknown 563.0
2823 Male, age 76, right hemisphere 518.1
Substantia nigra
nTPM: 628.3
2665 Male, age 74, both hemispheres 744.7
2590 Female, age 75, unknown 691.3
1851 Male, age 51, unknown 691.2
2583 Male, age 75, right hemisphere 650.8
1916 Female, age 42, unknown 642.0
2699 Male, age 18, unknown 624.6
2241 Male, age 72, unknown 607.7
2409 Female, age 72, unknown 570.6
1889 Female, age 72, unknown 533.0
1941 Male, age 53, unknown 526.9
Superior colliculus
nTPM: 622.6
2664 Male, age 75, both hemispheres 766.5
1995 Male, age 72, unknown 692.8
2587 Male, age 74, left hemisphere 678.4
1796 Male, age 53, unknown 636.0
2261 Male, age 18, unknown 621.5
2668 Female, age 75, unknown 611.0
1913 Female, age 42, unknown 610.9
1839 Male, age 51, unknown 585.3
2087 Female, age 72, unknown 526.4
1895 Male, age 76, right hemisphere 497.1
Ventral tegmental area
nTPM: 603.9
2021 Male, age 53, unknown 668.3
1915 Female, age 42, unknown 668.0
2223 Female, age 72, unknown 631.9
1942 Male, age 51, unknown 621.5
2410 Female, age 72, unknown 542.7
2218 Male, age 76, both hemispheres 491.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1222.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1222.8
Samples: 183

Max nTPM: 2995.2
Min nTPM: 429.3
Std nTPM: 478.2
Median nTPM: 1138.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2995.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2940.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2670.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2470.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2463.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2367.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 2297.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2294.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2239.5
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 2233.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2167.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 95.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.8
FF:10158-103A5 76 years, female 95.8

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 150.7
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 150.7
Samples: 1

Max nTPM: 150.7
Min nTPM: 150.7
Sample A 150.7
Midbrain
nTPM: 96.9
Samples: 1

Max nTPM: 96.9
Min nTPM: 96.9
Sample A 96.9
Superior colliculi
nTPM: 98.3
Samples: 1

Max nTPM: 98.3
Min nTPM: 98.3
Sample A 98.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.8
Samples: 3

Max nTPM: 4.4
Min nTPM: 0.6
Sample A Female 0.6
Sample B Female 4.4
Sample C Male 3.3
Midbrain
nTPM: 4.5
Samples: 3

Max nTPM: 5.8
Min nTPM: 3.7
Sample B Female 5.8
Sample C Male 3.7
Sample D Male 4.0
Periaqueductal gray
nTPM: 5.8
Samples: 3

Max nTPM: 7.1
Min nTPM: 3.9
Sample B Female 6.4
Sample C Male 3.9
Sample D Male 7.1
Superior colliculi
nTPM: 2.8
Samples: 4

Max nTPM: 4.6
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 2.2
Sample C Male 3.8
Sample D Male 4.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 506.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 506.3
Samples: 4

Max nTPM: 540.2
Min nTPM: 475.5
Sample A 540.2
Sample B 526.1
Sample C 475.5
Sample D 483.5

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