On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1191.7
nTPM
HPA Brain:
971.5
nTPM
GTEx:
1191.7
nTPM
FANTOM5:
2100.0
Scaled Tags Per Million
Macaque:
1.3
nTPM
Mouse:
915.9
nTPM
Rat:
0.4
nTPM
Pig:
1289.8
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
971.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 759.3
2411
Female, age 72, unknown
1145.8
1870
Female, age 42, unknown
987.1
1830
Male, age 51, unknown
806.1
1833
Male, age 53, unknown
768.9
2019
Male, age 18, unknown
745.3
2219
Male, age 76, both hemispheres
738.5
2828
Female, age 72, unknown
678.0
1827
Male, age 72, unknown
669.4
2586
Male, age 75, left hemisphere
585.7
2666
Male, age 74, left hemisphere
468.1
Dorsal raphe nucleus nTPM: 857.8
2750
Male, age 76, both hemispheres
1192.6
2298
Female, age 72, unknown
963.3
2047
Male, age 72, unknown
759.7
1828
Male, age 53, unknown
710.6
2016
Female, age 72, unknown
662.8
Inferior colliculus nTPM: 524.4
2097
Female, age 72, unknown
599.8
1848
Female, age 42, unknown
516.3
1890
Male, age 53, unknown
497.3
2849
Male, age 72, unknown
484.0
Median raphe nucleus nTPM: 911.7
2220
Male, age 76, midline
911.7
Periaquaductal grey, anterior nTPM: 702.2
1795
Male, age 51, unknown
707.1
2502
Female, age 75, unknown
706.5
1947
Male, age 18, unknown
693.0
Periaquaductal grey, dorsal nTPM: 584.6
2850
Male, age 76, both hemispheres
723.6
2464
Female, age 72, unknown
584.4
1831
Male, age 72, unknown
547.2
1840
Male, age 53, unknown
483.0
Periaquaductal grey, lateral nTPM: 695.7
2272
Male, age 74, both hemispheres
795.0
2053
Male, age 18, unknown
653.0
2140
Male, age 76, both hemispheres
639.1
Pretectal area nTPM: 677.8
2273
Male, age 74, both hemispheres
946.0
2224
Female, age 72, unknown
751.6
2825
Male, age 18, unknown
716.8
1815
Male, age 53, unknown
716.3
2407
Male, age 75, both hemispheres
694.7
2667
Female, age 75, unknown
679.7
2316
Male, age 76, right hemisphere
669.6
2007
Male, age 72, unknown
647.9
1817
Female, age 42, unknown
600.0
1816
Male, age 51, unknown
528.8
1944
Female, age 72, unknown
504.4
Red nucleus nTPM: 809.2
1821
Female, age 72, unknown
1055.7
1865
Male, age 51, unknown
964.6
1904
Male, age 53, unknown
950.0
2227
Male, age 72, unknown
871.0
2769
Male, age 72, unknown
844.8
1954
Female, age 42, unknown
832.7
2785
Male, age 18, unknown
787.6
2823
Male, age 76, right hemisphere
774.0
2503
Female, age 72, unknown
758.0
2588
Male, age 74, left hemisphere
650.5
2725
Female, age 75, unknown
635.6
2584
Male, age 75, left hemisphere
585.5
Substantia nigra nTPM: 812.3
1916
Female, age 42, unknown
1185.7
1851
Male, age 51, unknown
1033.8
1941
Male, age 53, unknown
898.8
2241
Male, age 72, unknown
893.0
2699
Male, age 18, unknown
845.3
2590
Female, age 75, unknown
815.4
2409
Female, age 72, unknown
777.9
1889
Female, age 72, unknown
700.8
2583
Male, age 75, right hemisphere
585.5
2665
Male, age 74, both hemispheres
386.9
Superior colliculus nTPM: 688.6
1913
Female, age 42, unknown
946.4
2587
Male, age 74, left hemisphere
858.0
2668
Female, age 75, unknown
794.4
1995
Male, age 72, unknown
731.2
1796
Male, age 53, unknown
664.0
2261
Male, age 18, unknown
627.6
1839
Male, age 51, unknown
605.1
2664
Male, age 75, both hemispheres
583.4
1895
Male, age 76, right hemisphere
570.3
2087
Female, age 72, unknown
505.7
Ventral tegmental area nTPM: 971.5
2223
Female, age 72, unknown
1174.6
2410
Female, age 72, unknown
1008.1
1915
Female, age 42, unknown
973.6
2021
Male, age 53, unknown
950.8
2218
Male, age 76, both hemispheres
948.2
1942
Male, age 51, unknown
773.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1191.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1191.7
Samples: 183
Max nTPM: 3305.6
Min nTPM: 221.7
Std nTPM: 457.0
Median nTPM: 1138.2
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
3305.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
2659.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2496.6
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
2325.0
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
2283.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
2258.2
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
2078.9
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
2055.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2054.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
2048.0
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1984.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
1931.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1876.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1862.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1840.8
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1787.1
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1775.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1770.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1754.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1741.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1735.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1723.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1719.1
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
1694.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1657.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1652.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1649.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1644.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1622.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1603.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1599.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1584.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1581.8
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
1560.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1556.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1550.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
1535.3
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1527.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
1505.5
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
1495.1
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1493.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1478.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1472.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1470.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
1468.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1468.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1467.5
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1448.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1441.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
1441.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1439.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1437.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1434.5
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
1428.4
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
1424.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1399.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
1376.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
1374.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1317.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1300.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1296.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
1288.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1273.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1253.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1252.7
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1252.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1251.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1245.9
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
1243.4
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1237.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1236.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
1233.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1232.3
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1219.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1217.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
1217.8
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1202.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1198.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1192.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1190.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1189.5
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1188.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1182.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
1176.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1164.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1158.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
1153.2
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1152.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1151.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1149.7
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
1144.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1138.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
1133.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1108.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1107.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1104.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1091.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
1073.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1072.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1070.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1070.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1057.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
1056.9
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
1042.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1042.2
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
1032.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
1019.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1012.8
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1010.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1002.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
989.6
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
988.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
986.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
980.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
971.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
969.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
967.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
966.7
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
963.1
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
957.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
954.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
947.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
945.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
941.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
933.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
928.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
926.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
924.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
921.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
918.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
917.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
910.1
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
909.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
901.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
899.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
898.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
894.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
894.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
884.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
883.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
866.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
865.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
862.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
852.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
846.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
831.9
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
824.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
807.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
800.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
798.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
793.9
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
790.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
788.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
786.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
773.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
770.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
770.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
759.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
757.3
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
742.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
717.2
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
714.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
710.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
700.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
695.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
694.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
690.5
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
688.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
679.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
668.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
664.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
651.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
628.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
620.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
604.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
596.6
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
469.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
467.7
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
446.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
443.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
389.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
298.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
221.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1.3
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 0.2
Samples: 1
Max nTPM: 0.2
Min nTPM: 0.2
Sample A
0.2
Midbrain nTPM: 1.3
Samples: 1
Max nTPM: 1.3
Min nTPM: 1.3
Sample A
1.3
Superior colliculi nTPM: 0.0
Samples: 1
Max nTPM: 0.0
Min nTPM: 0.0
Sample A
0.0
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1289.8
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 1289.8
Samples: 3
Max nTPM: 1621.0
Min nTPM: 806.7
Sample A
Female
1441.7
Sample B
Female
806.7
Sample C
Male
1621.0
Midbrain nTPM: 1039.7
Samples: 3
Max nTPM: 1294.9
Min nTPM: 701.3
Sample B
Female
1123.0
Sample C
Male
1294.9
Sample D
Male
701.3
Periaqueductal gray nTPM: 936.9
Samples: 3
Max nTPM: 1186.5
Min nTPM: 751.9
Sample B
Female
872.3
Sample C
Male
1186.5
Sample D
Male
751.9
Superior colliculi nTPM: 952.5
Samples: 4
Max nTPM: 1359.1
Min nTPM: 595.9
Sample A
Female
982.0
Sample B
Female
595.9
Sample C
Male
1359.1
Sample D
Male
873.0
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
915.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 915.9
Samples: 4
Max nTPM: 971.8
Min nTPM: 857.9
Sample A
971.8
Sample B
886.2
Sample C
857.9
Sample D
947.7
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.4
Rat sample
Sample description
nTPM
Midbrain nTPM: 0.4
Samples: 4
Max nTPM: 0.6
Min nTPM: 0.3
Sample A
0.6
Sample A
0.4
Sample A
0.3
Sample A
0.4
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The Human Protein Atlas project is funded
