MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:19.2 nTPM
GTEx:6.8 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:1.0 nTPM
Mouse:1.6 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.0
2586 Male, age 75, left hemisphere 26.9
2828 Female, age 72, unknown 23.1
1827 Male, age 72, unknown 15.3
2411 Female, age 72, unknown 14.9
2666 Male, age 74, left hemisphere 14.9
1833 Male, age 53, unknown 14.7
1830 Male, age 51, unknown 14.1
2019 Male, age 18, unknown 13.0
1870 Female, age 42, unknown 12.9
2219 Male, age 76, both hemispheres 10.5
Dorsal raphe nucleus
nTPM: 18.0
2047 Male, age 72, unknown 22.1
2016 Female, age 72, unknown 19.9
1828 Male, age 53, unknown 19.2
2298 Female, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 11.4
Inferior colliculus
nTPM: 16.0
2097 Female, age 72, unknown 16.7
2849 Male, age 72, unknown 16.3
1890 Male, age 53, unknown 15.7
1848 Female, age 42, unknown 15.2
Median raphe nucleus
nTPM: 7.8
2220 Male, age 76, midline 7.8
Periaquaductal grey, anterior
nTPM: 15.4
1947 Male, age 18, unknown 15.9
1795 Male, age 51, unknown 15.7
2502 Female, age 75, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 14.7
2464 Female, age 72, unknown 17.8
1840 Male, age 53, unknown 17.3
2850 Male, age 76, both hemispheres 12.4
1831 Male, age 72, unknown 11.2
Periaquaductal grey, lateral
nTPM: 15.5
2140 Male, age 76, both hemispheres 17.5
2053 Male, age 18, unknown 15.8
2272 Male, age 74, both hemispheres 13.1
Pretectal area
nTPM: 13.2
2825 Male, age 18, unknown 16.2
1817 Female, age 42, unknown 14.7
2316 Male, age 76, right hemisphere 14.4
2667 Female, age 75, unknown 14.3
1944 Female, age 72, unknown 14.0
1816 Male, age 51, unknown 13.9
1815 Male, age 53, unknown 12.8
2224 Female, age 72, unknown 11.8
2407 Male, age 75, both hemispheres 11.3
2007 Male, age 72, unknown 10.8
2273 Male, age 74, both hemispheres 10.5
Red nucleus
nTPM: 19.2
2584 Male, age 75, left hemisphere 22.3
2588 Male, age 74, left hemisphere 22.2
1954 Female, age 42, unknown 21.8
2503 Female, age 72, unknown 21.8
2725 Female, age 75, unknown 21.0
2769 Male, age 72, unknown 20.5
2227 Male, age 72, unknown 19.6
2823 Male, age 76, right hemisphere 18.8
1865 Male, age 51, unknown 17.2
1904 Male, age 53, unknown 16.3
1821 Female, age 72, unknown 15.7
2785 Male, age 18, unknown 13.3
Substantia nigra
nTPM: 15.9
2409 Female, age 72, unknown 18.1
2699 Male, age 18, unknown 17.9
2583 Male, age 75, right hemisphere 17.8
2665 Male, age 74, both hemispheres 17.2
1916 Female, age 42, unknown 16.9
1851 Male, age 51, unknown 15.8
2590 Female, age 75, unknown 15.3
2241 Male, age 72, unknown 14.9
1889 Female, age 72, unknown 13.1
1941 Male, age 53, unknown 11.5
Superior colliculus
nTPM: 13.5
2664 Male, age 75, both hemispheres 19.5
1796 Male, age 53, unknown 15.7
1995 Male, age 72, unknown 15.0
2261 Male, age 18, unknown 14.9
2087 Female, age 72, unknown 14.5
1839 Male, age 51, unknown 12.1
1895 Male, age 76, right hemisphere 11.8
2668 Female, age 75, unknown 11.8
2587 Male, age 74, left hemisphere 10.1
1913 Female, age 42, unknown 9.2
Ventral tegmental area
nTPM: 13.3
1942 Male, age 51, unknown 15.7
2410 Female, age 72, unknown 15.7
1915 Female, age 42, unknown 15.2
2021 Male, age 53, unknown 14.5
2218 Male, age 76, both hemispheres 9.8
2223 Female, age 72, unknown 9.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 183

Max nTPM: 23.6
Min nTPM: 0.7
Std nTPM: 3.9
Median nTPM: 6.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 23.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 19.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 18.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 18.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 17.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 16.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 15.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 15.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 14.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 13.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 13.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.9
FF:10158-103A5 76 years, female 2.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.5
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 1.0
Sample C Male 0.2
Sample D Male 0.4
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.3
Sample D Male 0.4
Periaqueductal gray
nTPM: 1.0
Samples: 3

Max nTPM: 1.1
Min nTPM: 0.8
Sample B Female 1.1
Sample C Male 0.8
Sample D Male 1.0
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.2
Sample A Female 0.3
Sample B Female 1.2
Sample C Male 0.2
Sample D Male 0.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 1.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.7
Samples: 4

Max nTPM: 3.0
Min nTPM: 0.9
Sample A Male 1.1
Sample B Male 0.9
Sample C Female 3.0
Sample D Female 1.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71280778 Antisense, RP_050818_01_E11, Mouse strain C57BL/6J (56 days, male) 0.6

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