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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.8
Sample id
Sample description
nTPM
Amygdala nTPM: 87.1
2814
Male, age 76, right hemisphere
104.0
1987
Female, age 91, left hemisphere
90.9
2517
Female, age 94, left hemisphere
84.7
2514
Male, age 75, right hemisphere
82.0
2695
Female, age 67, right hemisphere
73.9
Basal amygdala nTPM: 100.7
2243
Female, age 91, right hemisphere
124.2
2685
Female, age 94, left hemisphere
108.4
2110
Male, age 80, left hemisphere
103.0
2609
Male, age 75, right hemisphere
92.7
1955
Male, age 76, both hemispheres
92.0
2827
Female, age 67, right hemisphere
83.9
Central amygdala nTPM: 100.8
2826
Female, age 94, left hemisphere
121.1
2239
Male, age 80, left hemisphere
111.7
1905
Male, age 76, both hemispheres
97.5
2515
Male, age 75, right hemisphere
87.4
2701
Female, age 91, right hemisphere
86.5
Corticomedial amygdala nTPM: 93.7
2829
Male, age 80, left hemisphere
120.1
2242
Female, age 91, right hemisphere
104.9
2429
Female, age 94, left hemisphere
92.1
2535
Female, age 67, right hemisphere
86.0
2240
Male, age 76, both hemispheres
79.6
2428
Male, age 75, right hemisphere
79.3
Lateral amygdala nTPM: 92.7
2534
Female, age 94, left hemisphere
129.3
1883
Male, age 76, both hemispheres
97.4
2255
Female, age 91, right hemisphere
87.9
2256
Male, age 80, left hemisphere
82.8
2830
Female, age 67, right hemisphere
81.1
2516
Male, age 75, right hemisphere
77.4
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 91.1
Samples: 181
Max nTPM: 214.3
Min nTPM: 42.7
Std nTPM: 28.0
Median nTPM: 86.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
214.3
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
175.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
174.0
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
168.6
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
156.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
145.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
145.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
145.3
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
144.4
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
141.2
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
138.8
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
134.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
134.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
132.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
131.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
129.3
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
129.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
129.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
127.7
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
126.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
125.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
125.0
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
123.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
123.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
120.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
120.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
119.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
118.2
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
118.2
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
117.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
117.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
117.0
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
116.8
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
115.4
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
114.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
113.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
113.6
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
113.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
112.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
111.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
111.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
110.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
109.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
109.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
109.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
109.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
108.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
108.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
108.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
108.4
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
108.1
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
106.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
106.4
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
104.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
103.7
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
102.0
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
101.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
100.4
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
100.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
99.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
99.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
98.6
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
98.6
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
97.0
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
96.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
96.8
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
95.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
95.5
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
94.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
93.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
93.8
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
93.5
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
93.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
93.2
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
92.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
92.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
91.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
90.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
90.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
90.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
90.1
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
89.4
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
88.8
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
88.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
88.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
88.4
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
87.8
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
87.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
86.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
86.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
86.1
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
86.0
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
85.5
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
85.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
84.4
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
84.0
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
83.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
83.3
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
83.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
82.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
82.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
81.9
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
81.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
81.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
80.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
80.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
79.6
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
79.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
79.0
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
78.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
77.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
77.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
77.0
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
76.8
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
76.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
76.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
75.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
75.6
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
75.5
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
74.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
74.4
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
74.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
74.0
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
73.8
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
73.5
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
73.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
73.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
73.2
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
72.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
72.5
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
72.2
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
71.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
71.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
70.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
70.4
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
70.0
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
70.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
68.8
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
68.3
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
67.9
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
67.3
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
67.3
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
67.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
67.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
67.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
66.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
66.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
66.1
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
65.9
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
64.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
64.5
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
64.4
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
62.8
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
62.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
62.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
62.2
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
62.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
62.2
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
61.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
61.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
61.7
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
61.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
61.3
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
60.1
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
59.8
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
59.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
58.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
58.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
58.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
57.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
57.1
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
56.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
56.3
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
55.0
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
54.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
53.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
52.1
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
49.4
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
48.9
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
45.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
42.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.3
Pig sample
Sample description
nTPM
Amygdala nTPM: 74.3
Samples: 4
Max nTPM: 110.8
Min nTPM: 51.3
Sample A
Female
110.8
Sample B
Female
51.3
Sample C
Male
65.8
Sample D
Male
69.1
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
192.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 192.3
Samples: 4
Max nTPM: 203.5
Min nTPM: 187.4
Sample A
Male
203.5
Sample B
Male
188.6
Sample C
Female
187.4
Sample D
Female
189.7
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
