HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		95.915
RNA expressioni
Consensus:101.8 nTPM
HPA Brain:133.7 nTPM
GTEx:101.8 nTPM
FANTOM5:182.3 Scaled Tags Per Million
Pig:102.8 nTPM
Mouse:194.0 nTPM
Allen mouse:13.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039176Antibody CAB072836Antibody CAB080075
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedMediumHigh






HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA039176
Hippocampal formation mean intensity 95.915
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 49.084
Molecular layer of the dentate gyrus 33.962
Granular dentate gyrus 95.399
CA1 - oriens layer 34.280
CA1 - pyramidal layer 82.032
CA1 - radiatum layer 40.623
CA2 - oriens layer 31.823
CA2 - pyramidal layer 62.150
CA2 - radiatum layer 40.612
CA3 - oriens layer 38.391
CA3 - pyramidal layer 81.533
CA3 - radiatum layer 45.152
Stratum lucidum 46.496
Lacunosum moleculare 37.749
Subiculum 92.089

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 133.7
Sample id Sample description nTPM
Hippocampus
nTPM: 107.7
1898 Male, age 80, left hemisphere 142.9
2621 Female, age 67, right hemisphere 121.1
1855 Male, age 76, left hemisphere 105.7
2148 Female, age 91, left hemisphere 95.3
2529 Female, age 94, left hemisphere 91.4
1911 Female, age 85, right hemisphere 89.6
Dentate gyrus
nTPM: 113.5
2530 Female, age 94, left hemisphere 140.6
1927 Female, age 91, both hemispheres 133.6
2010 Male, age 76, both hemispheres 109.7
2246 Female, age 85, both hemispheres 102.4
2531 Female, age 67, both hemispheres 99.6
2528 Male, age 74, both hemispheres 95.4
Entorhinal gyrus
nTPM: 123.3
2613 Female, age 94, left hemisphere 165.2
2764 Male, age 80, right hemisphere 145.9
1938 Female, age 85, left hemisphere 134.3
1787 Male, age 76, left hemisphere 121.3
2686 Male, age 75, right hemisphere 93.1
2117 Female, age 91, right hemisphere 79.8
Hippocampus, CA1
nTPM: 126.4
2749 Male, age 80, left hemisphere 234.3
1873 Female, age 85, both hemispheres 109.7
2527 Male, age 74, both hemispheres 103.2
2082 Female, age 91, right hemisphere 92.9
2045 Male, age 76, both hemispheres 91.9
Hippocampus, CA2
nTPM: 113.3
1963 Male, age 80, left hemisphere 140.8
1892 Male, age 76, both hemispheres 138.6
2437 Female, age 94, left hemisphere 118.4
2249 Male, age 74, both hemispheres 101.6
1940 Female, age 85, left hemisphere 91.4
2113 Female, age 91, right hemisphere 89.2
Hippocampus, CA3
nTPM: 120.8
2137 Male, age 80, left hemisphere 179.0
2620 Female, age 94, left hemisphere 125.7
2861 Female, age 67, both hemispheres 124.7
1867 Male, age 76, both hemispheres 113.5
2436 Male, age 74, both hemispheres 95.6
1891 Female, age 85, both hemispheres 86.1
Parahippocampal cortex
nTPM: 111.7
1850 Male, age 80, both hemispheres 131.7
2245 Female, age 91, both hemispheres 128.7
1990 Female, age 91, right hemisphere 125.6
1933 Female, age 85, both hemispheres 115.1
2693 Female, age 94, both hemispheres 111.6
2532 Female, age 72, left hemisphere 107.0
2250 Female, age 67, right hemisphere 106.4
2622 Female, age 67, right hemisphere 101.0
2692 Male, age 74, both hemispheres 100.4
2018 Male, age 76, both hemispheres 90.0
Perirhinal gyrus
nTPM: 133.7
1847 Female, age 91, left hemisphere 168.2
1794 Male, age 80, right hemisphere 141.2
2521 Female, age 94, right hemisphere 129.7
1841 Female, age 85, right hemisphere 116.9
2848 Male, age 76, right hemisphere 112.3
Subiculum
nTPM: 105.3
2438 Female, age 94, left hemisphere 128.7
1901 Male, age 80, both hemispheres 123.6
1977 Female, age 85, both hemispheres 115.6
2619 Male, age 74, both hemispheres 99.1
2042 Male, age 76, both hemispheres 91.0
2729 Female, age 91, right hemisphere 73.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 101.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 101.8
Samples: 255

Max nTPM: 211.2
Min nTPM: 32.4
Std nTPM: 36.9
Median nTPM: 97.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 211.2
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 206.7
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 204.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 197.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 196.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 195.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 192.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 190.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 187.3
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 185.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 177.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 182.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 182.3
FF:10169-103B7 60 years, female 243.0
FF:10153-102I9 76 years, female 121.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 102.8
Pig sample Sample description nTPM
Subiculum
nTPM: 85.1
Samples: 4

Max nTPM: 105.0
Min nTPM: 75.7
Sample A Female 105.0
Sample B Female 75.7
Sample C Male 83.3
Sample D Male 76.2
Dorsal hippocampus
nTPM: 102.9
Samples: 4

Max nTPM: 137.1
Min nTPM: 81.6
Sample A Female 137.1
Sample B Female 109.0
Sample C Male 83.7
Sample D Male 81.6
Entorhinal cortex
nTPM: 91.2
Samples: 4

Max nTPM: 104.3
Min nTPM: 81.1
Sample A Female 104.3
Sample B Female 85.9
Sample C Male 93.3
Sample D Male 81.1
Ventral hippocampus
nTPM: 94.2
Samples: 4

Max nTPM: 119.0
Min nTPM: 61.7
Sample A Female 89.7
Sample B Female 61.7
Sample C Male 106.2
Sample D Male 119.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 194.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 165.1
Samples: 4

Max nTPM: 180.3
Min nTPM: 155.6
Sample A Male 157.5
Sample B Male 155.6
Sample C Female 167.1
Sample D Female 180.3
Hippocampal formation
nTPM: 194.0
Samples: 4

Max nTPM: 200.6
Min nTPM: 189.3
Sample A Male 200.6
Sample B Male 189.3
Sample C Female 195.8
Sample D Female 190.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.3
68080680 Antisense, RP_040929_01_D10, Mouse strain C57BL/6J (56 days, male) 13.3

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