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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:349.5 nTPM
HPA Brain:119.7 nTPM
GTEx:349.5 nTPM
FANTOM5:151.0 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:801.0 nTPM
Allen mouse:15.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.7
Sample id Sample description nTPM
Amygdala
nTPM: 119.7
2814 Male, age 76, right hemisphere 159.2
2514 Male, age 75, right hemisphere 122.5
1987 Female, age 91, left hemisphere 118.7
2695 Female, age 67, right hemisphere 106.7
2517 Female, age 94, left hemisphere 91.2
Basal amygdala
nTPM: 91.5
2609 Male, age 75, right hemisphere 110.3
2110 Male, age 80, left hemisphere 108.6
1955 Male, age 76, both hemispheres 95.6
2685 Female, age 94, left hemisphere 87.0
2243 Female, age 91, right hemisphere 86.4
2827 Female, age 67, right hemisphere 61.2
Central amygdala
nTPM: 101.0
1905 Male, age 76, both hemispheres 125.1
2826 Female, age 94, left hemisphere 111.0
2515 Male, age 75, right hemisphere 94.3
2239 Male, age 80, left hemisphere 90.0
2701 Female, age 91, right hemisphere 84.6
Corticomedial amygdala
nTPM: 91.9
2829 Male, age 80, left hemisphere 112.1
2428 Male, age 75, right hemisphere 102.1
2240 Male, age 76, both hemispheres 97.2
2242 Female, age 91, right hemisphere 96.8
2429 Female, age 94, left hemisphere 89.7
2535 Female, age 67, right hemisphere 53.7
Lateral amygdala
nTPM: 88.2
1883 Male, age 76, both hemispheres 126.8
2516 Male, age 75, right hemisphere 113.4
2534 Female, age 94, left hemisphere 87.4
2255 Female, age 91, right hemisphere 69.5
2256 Male, age 80, left hemisphere 66.5
2830 Female, age 67, right hemisphere 65.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

349.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 349.5
Samples: 181

Max nTPM: 982.9
Min nTPM: 178.3
Std nTPM: 129.1
Median nTPM: 328.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 982.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 906.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 897.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 851.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 663.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 629.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 594.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 586.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 579.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 542.7
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 530.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 523.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 520.0
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 518.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 514.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 510.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 509.2
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 506.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 501.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 492.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 478.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 471.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 471.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 469.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 463.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 463.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 461.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 455.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 450.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 442.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 441.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 434.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 429.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 429.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 428.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 426.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 420.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 416.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 416.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 415.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 414.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 410.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 408.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 401.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 399.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 397.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 391.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 388.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 381.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 381.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 379.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 379.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 378.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 378.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 377.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 376.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 376.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 374.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 373.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 372.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 370.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 370.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 368.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 368.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 367.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 364.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 364.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 363.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 363.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 362.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 362.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 361.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 357.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 355.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 355.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 353.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 350.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 350.3
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 347.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 341.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 339.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 339.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 339.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 339.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 338.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 337.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 334.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 332.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 331.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 329.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 328.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 325.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 324.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 324.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 324.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 321.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 320.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 316.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 316.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 313.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 312.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 311.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 310.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 309.3
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 308.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 308.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 306.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 306.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 305.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 304.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 304.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 303.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 300.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 299.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 294.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 292.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 289.9
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 288.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 287.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 281.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 279.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 279.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 278.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 278.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 278.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 276.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 276.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 272.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 271.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 270.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 270.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 268.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 266.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 265.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 265.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 264.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 263.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 262.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 260.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 259.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 259.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 256.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 254.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 252.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 250.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 250.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 249.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 246.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 242.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 238.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 236.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 235.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 231.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 230.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 229.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 228.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 226.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 226.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 225.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 223.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 222.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 221.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 219.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 217.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 216.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 214.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 213.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 212.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 210.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 208.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 204.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 202.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 200.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 196.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 193.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 192.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 190.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 186.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 184.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 179.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 178.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

151.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 151.0
FF:10151-102I7 76 years, female 151.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8.2
Pig sample Sample description nTPM
Amygdala
nTPM: 8.2
Samples: 4

Max nTPM: 10.7
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 6.4
Sample C Male 10.7
Sample D Male 10.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

801.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 801.0
Samples: 4

Max nTPM: 818.9
Min nTPM: 762.5
Sample A Male 762.5
Sample B Male 817.5
Sample C Female 818.9
Sample D Female 805.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.6
67765702 Antisense, RP_040916_01_D05, Mouse strain C57BL/6J (56 days, male) 17.0
77371785 Antisense, RP_070116_01_C02, Mouse strain C57BL/6J (56 days, male) 14.2

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