HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:312.4 nTPM
HPA Brain:135.8 nTPM
GTEx:312.4 nTPM
FANTOM5:195.4 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:912.5 nTPM
Allen mouse:16.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042777Antibody HPA048459
Glial cells MediumLow
Neuronal cells HighHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 135.8
Sample id Sample description nTPM
Hippocampus
nTPM: 112.3
1898 Male, age 80, left hemisphere 162.0
2621 Female, age 67, right hemisphere 115.1
2529 Female, age 94, left hemisphere 111.6
1855 Male, age 76, left hemisphere 101.9
1911 Female, age 85, right hemisphere 95.7
2148 Female, age 91, left hemisphere 87.5
Dentate gyrus
nTPM: 106.3
1927 Female, age 91, both hemispheres 135.7
2010 Male, age 76, both hemispheres 127.3
2530 Female, age 94, left hemisphere 104.0
2246 Female, age 85, both hemispheres 101.6
2528 Male, age 74, both hemispheres 94.6
2531 Female, age 67, both hemispheres 74.7
Entorhinal gyrus
nTPM: 99.3
2764 Male, age 80, right hemisphere 124.2
1938 Female, age 85, left hemisphere 106.7
1787 Male, age 76, left hemisphere 106.1
2613 Female, age 94, left hemisphere 89.3
2686 Male, age 75, right hemisphere 84.7
2117 Female, age 91, right hemisphere 84.5
Hippocampus, CA1
nTPM: 128.8
2749 Male, age 80, left hemisphere 211.5
1873 Female, age 85, both hemispheres 125.2
2527 Male, age 74, both hemispheres 115.1
2045 Male, age 76, both hemispheres 99.5
2082 Female, age 91, right hemisphere 92.9
Hippocampus, CA2
nTPM: 124.0
1963 Male, age 80, left hemisphere 164.5
1892 Male, age 76, both hemispheres 154.6
2249 Male, age 74, both hemispheres 140.5
2437 Female, age 94, left hemisphere 98.2
1940 Female, age 85, left hemisphere 93.6
2113 Female, age 91, right hemisphere 92.6
Hippocampus, CA3
nTPM: 115.2
2137 Male, age 80, left hemisphere 154.4
2436 Male, age 74, both hemispheres 145.3
1867 Male, age 76, both hemispheres 135.4
1891 Female, age 85, both hemispheres 109.3
2620 Female, age 94, left hemisphere 81.3
2861 Female, age 67, both hemispheres 65.7
Parahippocampal cortex
nTPM: 109.2
1850 Male, age 80, both hemispheres 132.0
1990 Female, age 91, right hemisphere 126.0
1933 Female, age 85, both hemispheres 122.5
2250 Female, age 67, right hemisphere 121.6
2245 Female, age 91, both hemispheres 119.6
2018 Male, age 76, both hemispheres 109.9
2532 Female, age 72, left hemisphere 106.4
2693 Female, age 94, both hemispheres 95.4
2692 Male, age 74, both hemispheres 84.4
2622 Female, age 67, right hemisphere 74.0
Perirhinal gyrus
nTPM: 135.8
1847 Female, age 91, left hemisphere 172.3
1794 Male, age 80, right hemisphere 140.7
1841 Female, age 85, right hemisphere 136.6
2521 Female, age 94, right hemisphere 122.1
2848 Male, age 76, right hemisphere 107.5
Subiculum
nTPM: 109.1
1901 Male, age 80, both hemispheres 134.8
1977 Female, age 85, both hemispheres 122.4
2438 Female, age 94, left hemisphere 107.2
2042 Male, age 76, both hemispheres 106.2
2619 Male, age 74, both hemispheres 98.8
2729 Female, age 91, right hemisphere 85.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 312.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 312.4
Samples: 255

Max nTPM: 727.1
Min nTPM: 136.6
Std nTPM: 103.2
Median nTPM: 292.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 727.1
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 657.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 619.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 618.1
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 610.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 584.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 579.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 574.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 513.9
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 509.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 498.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 195.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 195.4
FF:10169-103B7 60 years, female 256.5
FF:10153-102I9 76 years, female 134.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 8.0
Pig sample Sample description nTPM
Subiculum
nTPM: 6.4
Samples: 4

Max nTPM: 7.9
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 7.9
Sample C Male 7.5
Sample D Male 7.9
Dorsal hippocampus
nTPM: 7.5
Samples: 4

Max nTPM: 11.7
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 6.2
Sample C Male 7.1
Sample D Male 11.7
Entorhinal cortex
nTPM: 7.0
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.3
Sample A Female 7.5
Sample B Female 8.5
Sample C Male 6.5
Sample D Male 5.3
Ventral hippocampus
nTPM: 8.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 4.5
Sample A Female 9.3
Sample B Female 11.8
Sample C Male 4.5
Sample D Male 6.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 912.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 827.1
Samples: 4

Max nTPM: 884.8
Min nTPM: 802.6
Sample A Male 802.6
Sample B Male 805.0
Sample C Female 884.8
Sample D Female 816.0
Hippocampal formation
nTPM: 912.5
Samples: 4

Max nTPM: 1073.5
Min nTPM: 835.3
Sample A Male 1073.5
Sample B Male 851.1
Sample C Female 835.3
Sample D Female 890.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 16.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 16.3
67765702 Antisense, RP_040916_01_D05, Mouse strain C57BL/6J (56 days, male) 18.1
77371785 Antisense, RP_070116_01_C02, Mouse strain C57BL/6J (56 days, male) 14.5

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