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  • FTH1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:7738.8 nTPM
HPA Brain:4014.7 nTPM
GTEx:7738.8 nTPM
FANTOM5:156.1 Scaled Tags Per Million
Mouse:2461.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4014.7
Sample id Sample description nTPM
Amygdala
nTPM: 3655.6
2514 Male, age 75, right hemisphere 4123.0
2695 Female, age 67, right hemisphere 3880.7
2814 Male, age 76, right hemisphere 3778.8
2517 Female, age 94, left hemisphere 3458.4
1987 Female, age 91, left hemisphere 3037.2
Basal amygdala
nTPM: 3820.3
2609 Male, age 75, right hemisphere 4819.1
2827 Female, age 67, right hemisphere 4209.0
2110 Male, age 80, left hemisphere 3831.4
2243 Female, age 91, right hemisphere 3642.7
1955 Male, age 76, both hemispheres 3219.2
2685 Female, age 94, left hemisphere 3200.1
Central amygdala
nTPM: 4009.1
2826 Female, age 94, left hemisphere 5619.9
2515 Male, age 75, right hemisphere 4476.5
2239 Male, age 80, left hemisphere 3920.0
1905 Male, age 76, both hemispheres 3266.3
2701 Female, age 91, right hemisphere 2762.9
Corticomedial amygdala
nTPM: 3203.8
2829 Male, age 80, left hemisphere 3618.3
2428 Male, age 75, right hemisphere 3551.8
2242 Female, age 91, right hemisphere 3273.2
2240 Male, age 76, both hemispheres 3192.0
2535 Female, age 67, right hemisphere 2940.3
2429 Female, age 94, left hemisphere 2646.9
Lateral amygdala
nTPM: 4014.7
2830 Female, age 67, right hemisphere 5146.9
2516 Male, age 75, right hemisphere 4840.8
2534 Female, age 94, left hemisphere 4283.5
2256 Male, age 80, left hemisphere 3625.3
1883 Male, age 76, both hemispheres 3165.3
2255 Female, age 91, right hemisphere 3026.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7738.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 7738.8
Samples: 181

Max nTPM: 21719.3
Min nTPM: 3588.8
Std nTPM: 2524.7
Median nTPM: 7234.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 21719.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 18646.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 15510.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 14895.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 13663.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 13180.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 12989.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 12780.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 12541.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 11941.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 11642.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 11510.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 11495.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 11339.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 11281.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 11193.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 11192.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 11115.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 10948.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 10734.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 10725.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 10717.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 10716.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 10292.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 10173.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 9995.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 9934.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 9897.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 9874.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 9513.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 9436.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 9326.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 9273.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 9224.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 9213.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 9206.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 9121.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 9116.5
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 9099.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 9063.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 9062.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 8962.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 8898.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 8873.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 8856.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 8820.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 8804.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 8759.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 8722.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 8604.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 8559.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 8516.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 8484.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 8479.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 8450.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 8391.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 8340.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 8279.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 8221.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 8206.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 8138.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 8114.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 8072.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 8058.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 8052.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 7946.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 7936.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 7881.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 7864.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 7856.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 7816.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 7764.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 7756.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 7755.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 7658.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 7567.7
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 7543.4
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 7533.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 7502.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 7472.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 7461.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 7456.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 7450.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 7397.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 7383.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 7359.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 7300.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 7267.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 7263.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 7259.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 7234.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 7228.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 7223.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 7197.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 7177.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 7145.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 7097.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7084.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 7015.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 7011.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 6967.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 6898.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 6878.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 6865.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 6859.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 6857.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 6854.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 6836.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 6805.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 6761.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 6756.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 6715.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 6670.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 6657.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 6517.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 6509.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 6487.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 6485.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 6474.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 6459.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 6410.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 6381.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 6363.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 6328.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 6317.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 6247.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 6214.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 6202.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 6187.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 6158.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 6145.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 6136.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 6136.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 6133.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 6120.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 6119.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 6115.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 6097.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 6064.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 6023.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 5997.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 5990.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 5962.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 5942.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 5909.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 5857.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 5762.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 5747.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 5711.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 5702.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 5682.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 5637.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 5622.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 5561.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 5554.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 5516.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 5464.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 5409.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 5376.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 5376.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 5374.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 5328.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 5319.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 5262.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 5225.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 5204.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 5201.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 5065.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 5057.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 4979.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 4879.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 4857.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 4819.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 4817.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 4617.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 4368.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 4346.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 4261.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 4173.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 4134.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 3588.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

156.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 156.1
FF:10151-102I7 76 years, female 156.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2461.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 2461.0
Samples: 4

Max nTPM: 3091.6
Min nTPM: 2170.8
Sample A Male 2170.8
Sample B Male 2375.2
Sample C Female 3091.6
Sample D Female 2206.3

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