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  • SUMMARY

  • TISSUE

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  • FTH1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:9247.4 nTPM
HPA Brain:5749.3 nTPM
GTEx:9247.4 nTPM
FANTOM5:234.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5749.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 4489.9
1981 Female, age 72, midline 5147.6
2565 Male, age 75, midline 4974.8
2194 Female, age 79, both hemispheres 4279.5
2816 Male, age 47, midline 4084.2
2048 Male, age 55, midline 3963.6
Cervical spinal cord, dorsal horn
nTPM: 4019.3
2173 Female, age 72, unknown 5630.5
2069 Male, age 47, both hemispheres 4501.9
2296 Male, age 66, both hemispheres 4434.5
1877 Male, age 55, unknown 3855.7
2721 Male, age 90, both hemispheres 2934.0
2297 Male, age 75, both hemispheres 2759.2
Cervical spinal cord, ventral horn
nTPM: 5749.3
2809 Male, age 90, both hemispheres 7429.3
2480 Male, age 75, both hemispheres 7159.7
2295 Male, age 66, both hemispheres 5659.6
2098 Female, age 72, unknown 5225.5
2068 Male, age 55, unknown 4757.7
2820 Female, age 79, both hemispheres 4264.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

9247.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 9247.4
Samples: 204

Max nTPM: 31426.5
Min nTPM: 3509.3
Std nTPM: 3620.3
Median nTPM: 8522.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 31426.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 22572.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 20683.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 20230.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 18350.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 17530.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 16887.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 16119.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 16065.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 15304.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 15149.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 14950.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 14827.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 14762.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 14721.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 14658.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 14426.0
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 14151.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 13793.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 13600.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 13465.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 13390.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 13382.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 13336.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 13133.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 13129.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 12898.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 12870.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 12847.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 12735.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 12664.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 12650.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 12531.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 12429.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 12368.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 12305.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 12263.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 12257.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 12114.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 12113.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 11991.2
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 11942.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 11724.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 11719.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 11698.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 11616.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 11499.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 11404.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 11213.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 11014.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 10892.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10860.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 10736.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 10662.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 10624.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 10596.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 10468.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 10425.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 10362.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 10295.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 10272.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 10194.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 10189.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 10185.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 10182.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 10006.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 9905.9
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 9824.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 9802.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 9743.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 9709.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 9597.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 9543.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 9534.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 9503.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 9447.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 9324.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 9310.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 9222.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 9173.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 9026.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 9020.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 8953.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 8935.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 8895.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 8871.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 8836.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 8748.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 8717.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 8712.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 8704.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 8698.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 8674.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 8664.2
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 8628.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 8612.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 8601.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 8599.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 8564.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 8551.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 8540.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 8522.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 8521.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 8512.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 8489.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 8475.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 8468.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 8433.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 8400.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 8392.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 8342.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 8330.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 8268.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 8214.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 8128.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 8072.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 8059.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 7974.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 7967.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 7961.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 7825.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 7820.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 7736.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 7721.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 7706.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 7679.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 7630.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 7626.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 7620.7
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 7595.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 7507.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 7459.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 7433.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 7305.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 7265.4
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 7255.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 7228.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 7184.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 7183.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 7164.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 7154.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 7098.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 6982.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 6941.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 6889.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 6887.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 6881.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 6860.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 6822.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 6803.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 6797.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 6795.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 6754.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 6707.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 6701.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 6626.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 6558.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 6533.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 6531.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 6496.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 6457.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 6454.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 6435.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 6435.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 6428.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 6357.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 6348.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 6338.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 6332.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 6319.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 6305.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 6283.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 6262.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 6146.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 6124.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 6066.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6063.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 6050.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 5981.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 5971.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 5960.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 5870.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 5782.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 5775.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 5697.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 5652.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 5645.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 5631.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 5455.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 5424.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 5312.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 5290.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 5278.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 5224.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 4955.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 4894.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 4839.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 4796.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 4632.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 4440.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4331.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 4291.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 4212.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 3509.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

234.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 234.4
FF:10181-103D1 60 years, female 300.8
FF:10159-103A6 76 years, female 167.9

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