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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1052.8 nTPM
HPA Brain:408.3 nTPM
GTEx:1052.8 nTPM
FANTOM5:84.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

408.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 307.8
2565 Male, age 75, midline 368.7
1981 Female, age 72, midline 346.3
2816 Male, age 47, midline 280.4
2048 Male, age 55, midline 280.1
2194 Female, age 79, both hemispheres 263.3
Cervical spinal cord, dorsal horn
nTPM: 289.9
2173 Female, age 72, unknown 392.7
2296 Male, age 66, both hemispheres 334.3
2069 Male, age 47, both hemispheres 313.1
1877 Male, age 55, unknown 294.7
2297 Male, age 75, both hemispheres 213.7
2721 Male, age 90, both hemispheres 191.0
Cervical spinal cord, ventral horn
nTPM: 408.3
2480 Male, age 75, both hemispheres 619.7
2809 Male, age 90, both hemispheres 471.3
2098 Female, age 72, unknown 399.6
2068 Male, age 55, unknown 361.6
2295 Male, age 66, both hemispheres 356.5
2820 Female, age 79, both hemispheres 241.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1052.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1052.8
Samples: 204

Max nTPM: 2832.8
Min nTPM: 377.2
Std nTPM: 362.7
Median nTPM: 980.4
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 2832.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 2293.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 2097.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 2001.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 2001.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1924.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 1829.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1783.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1781.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1676.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1675.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1670.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 1655.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 1653.6
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 1649.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1633.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 1601.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1583.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 1574.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 1564.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 1522.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 1511.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1495.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1494.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1482.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 1471.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1465.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 1450.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1436.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 1432.7
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 1415.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1390.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1384.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1379.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 1377.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1376.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1371.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1361.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 1350.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1343.5
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 1308.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1306.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1305.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1300.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1282.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 1280.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 1276.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1275.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1271.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1248.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 1248.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1230.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1229.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 1229.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 1224.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1202.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1200.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1197.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 1197.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 1194.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1168.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1156.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1156.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1153.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 1152.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1151.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 1145.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1141.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1139.5
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 1134.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1134.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 1133.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1114.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1098.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1096.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 1083.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1077.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1072.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1069.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1066.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1063.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1060.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1052.7
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 1048.8
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 1046.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1039.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1034.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1026.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1023.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1019.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1018.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1012.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1010.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1005.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1002.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 995.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 991.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 991.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 988.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 987.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 986.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 984.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 976.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 971.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 969.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 968.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 968.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 967.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 966.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 961.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 958.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 951.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 937.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 936.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 932.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 931.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 930.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 922.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 922.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 913.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 913.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 911.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 904.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 898.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 896.6
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 895.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 894.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 892.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 891.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 890.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 881.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 879.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 874.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 873.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 870.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 869.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 869.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 860.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 859.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 854.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 851.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 850.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 850.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 843.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 839.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 836.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 834.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 831.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 830.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 827.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 827.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 819.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 815.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 812.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 812.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 808.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 801.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 800.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 792.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 790.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 781.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 771.0
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 764.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 763.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 760.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 756.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 748.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 748.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 743.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 733.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 732.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 710.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 700.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 698.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 694.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 694.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 693.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 692.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 684.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 684.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 680.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 680.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 680.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 677.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 669.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 669.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 660.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 655.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 654.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 638.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 630.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 612.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 609.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 595.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 571.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 567.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 553.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 524.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 508.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 505.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 489.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 489.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 434.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 377.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 84.4
FF:10181-103D1 60 years, female 92.8
FF:10159-103A6 76 years, female 76.1

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