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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:253.0 nTPM
GTEx:253.0 nTPM
FANTOM5:69.5 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

253.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 253.0
Samples: 105

Max nTPM: 376.8
Min nTPM: 79.1
Std nTPM: 57.1
Median nTPM:
321_1 62 years, female 376.8
246_1 77 years, male 361.1
320_1 89 years, female 355.9
17_1 71 years, male 355.5
404_1 82 years, female 352.7
319_1 81 years, male 352.3
153_1 70 years, female 344.7
2_1 77 years, female 338.9
526_1 61 years, male 336.4
189_1 76 years, male 332.2
389_1 86 years, female 323.1
386_1 76 years, male 320.3
376_1 75 years, female 318.8
352_1 62 years, male 318.3
394_1 75 years, female 316.9
379_1 60 years, male 315.8
120_1 70 years, female 311.9
6_1 73 years, female 311.7
251_1 78 years, male 307.7
311_1 78 years, male 304.3
425_1 59 years, female 303.3
139_1 64 years, female 299.4
353_1 82 years, female 298.7
35_1 74 years, female 294.3
137_1 83 years, male 289.9
243_1 75 years, male 287.0
322_1 76 years, male 286.7
377_1 82 years, female 286.4
172_1 72 years, female 285.9
518_1 75 years, female 284.0
355_1 70 years, female 283.7
293_1 68 years, female 282.8
396_1 62 years, male 279.7
18_1 88 years, male 275.6
126_1 63 years, male 274.4
218_1 71 years, female 273.5
109_1 81 years, female 269.3
292_1 71 years, male 268.9
447_1 81 years, male 268.1
229_1 69 years, female 267.7
452_1 88 years, female 265.4
266_1 85 years, male 265.1
406_1 79 years, male 265.0
295_1 61 years, female 264.8
318_1 68 years, male 264.0
4_1 88 years, female 261.9
503_1 68 years, male 261.9
495_1 57 years, female 259.9
286_1 68 years, female 259.6
237_1 82 years, male 259.2
347_1 72 years, male 256.7
99_1 64 years, male 256.4
163_1 78 years, male 253.7
349_1 83 years, male 253.7
480_1 63 years, male 253.4
307_1 66 years, female 250.5
217_1 76 years, male 249.2
350_1 84 years, female 248.8
115_1 83 years, male 248.5
384_1 83 years, male 248.2
254_1 77 years, female 247.1
506_1 65 years, male 245.5
468_1 89 years, male 245.4
405_1 91 years, male 243.6
177_1 74 years, male 242.6
316_1 62 years, male 241.3
317_1 60 years, male 240.8
335_1 73 years, female 239.0
351_1 91 years, male 237.9
356_1 87 years, female 237.2
265_1 87 years, male 234.3
9_1 66 years, female 233.8
145_1 84 years, male 233.4
348_1 84 years, male 231.1
173_1 67 years, male 230.8
499_1 55 years, female 229.8
264_1 73 years, female 228.7
315_1 62 years, female 228.6
162_1 79 years, female 226.6
517_1 88 years, male 222.9
288_1 66 years, female 222.5
313_1 79 years, female 216.3
142_1 61 years, female 209.6
354_1 81 years, female 209.3
375_1 74 years, female 208.3
324_1 76 years, male 202.3
415_1 77 years, female 201.5
314_1 67 years, male 197.6
291_1 76 years, male 197.2
119_1 70 years, female 190.0
41_1 94 years, female 188.9
117_1 61 years, male 184.5
414_1 84 years, female 180.4
42_1 85 years, male 176.3
308_1 70 years, female 173.4
89_1 63 years, male 168.4
32_1 67 years, male 165.7
466_1 57 years, female 165.6
81_1 67 years, male 160.5
501_1 88 years, male 158.3
43_1 64 years, female 154.1
413_1 59 years, female 133.6
149_1 88 years, male 120.6
491_1 89 years, female 117.4
490_1 67 years, female 79.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

69.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 69.5
FF:10030-101E3 24-65 years, mixed 69.5

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