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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
Tissue methods
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1060.3 nTPM
HPA:516.8 nTPM
GTEx:1060.3 nTPM
FANTOM5:99.6 Scaled Tags Per Million
SMALL INTESTINE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody CAB009561
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

516.8
overview
Male, age 65
Small intestine sample 232
nTPM: 566.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 520.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 498
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 482.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1060.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1060.3
Samples: 207

Max nTPM: 2352.4
Min nTPM: 401.0
Std nTPM: 340.0
Median nTPM: 1011.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2352.4
GTEX-1RQED-2826-SM-HLJQK 60-69 years, male 2272.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 2190.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1950.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1869.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1858.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1791.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1771.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 1771.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1745.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1707.1
GTEX-1HKZK-2226-SM-GA91V 40-49 years, male 1631.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1629.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1626.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 1614.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1608.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1598.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1594.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1552.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1538.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1535.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1511.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1505.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1498.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1469.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1465.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1444.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1422.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1419.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1386.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1382.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1381.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1372.8
GTEX-1MCYP-1626-SM-HLJQ5 20-29 years, female 1347.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1347.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1338.6
GTEX-13X6H-1826-SM-5O9D1 50-59 years, female 1332.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1330.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1329.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1324.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1324.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1315.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1311.4
GTEX-1HSGN-2126-SM-GA8ZB 40-49 years, female 1304.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1300.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1300.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1283.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1283.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1275.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1274.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1270.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1270.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1268.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1264.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1237.0
GTEX-1HCUA-1726-SM-GA8Z2 50-59 years, female 1234.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1229.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1215.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1208.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1201.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1201.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1197.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1193.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1193.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 1183.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1170.2
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1155.0
GTEX-1M5QR-2226-SM-HLJRV 40-49 years, male 1154.5
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1153.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1152.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1141.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1134.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1133.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1130.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1129.3
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1120.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1112.6
GTEX-WHPG-1826-SM-GNTAH 50-59 years, male 1111.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1097.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1097.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1090.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1084.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1083.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1080.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 1075.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1072.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1072.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1070.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1069.5
GTEX-1PFEY-1326-SM-HK791 30-39 years, male 1063.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1058.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1054.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1049.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1047.6
GTEX-ZV7C-1426-SM-GNTB8 50-59 years, male 1047.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1044.7
GTEX-X4LF-1326-SM-HLJSD 50-59 years, male 1041.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1036.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1036.6
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1028.6
GTEX-1HBPN-1926-SM-GA91H 50-59 years, male 1024.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1021.9
GTEX-U8XE-2226-SM-HAUZQ 30-39 years, male 1017.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1011.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1003.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 993.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 990.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 969.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 968.8
GTEX-W5X1-1926-SM-GOQYX 40-49 years, female 953.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 949.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 944.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 943.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 943.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 940.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 939.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 939.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 937.8
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 932.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 930.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 929.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 928.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 927.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 925.1
GTEX-1192X-2526-SM-59868 50-59 years, male 923.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 913.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 912.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 902.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 898.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 896.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 895.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 894.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 890.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 889.8
GTEX-ZT9X-1026-SM-HLJS2 40-49 years, male 884.5
GTEX-144GM-1026-SM-5O9AZ 20-29 years, male 881.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 871.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 869.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 866.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 862.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 860.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 860.0
GTEX-YJ8A-2126-SM-GQ1C7 20-29 years, male 858.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 856.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 853.4
GTEX-1MA7W-0726-SM-HLJQU 20-29 years, female 845.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 844.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 842.8
GTEX-1NHNU-2526-SM-HK79M 50-59 years, male 841.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 839.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 838.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 836.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 834.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 833.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 830.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 830.4
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 827.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 817.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 810.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 801.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 798.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 793.0
GTEX-XPT6-1026-SM-GOQYN 20-29 years, male 791.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 785.1
GTEX-1S831-1526-SM-HLJQS 20-29 years, male 781.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 778.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 778.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 778.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 778.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 767.9
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 765.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 763.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 755.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 741.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 741.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 730.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 728.2
GTEX-ZPU1-1826-SM-GNTB3 40-49 years, male 726.4
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 722.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 710.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 709.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 708.2
GTEX-14PN3-2026-SM-68729 60-69 years, female 702.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 692.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 691.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 690.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 688.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 687.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 680.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 652.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 629.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 623.3
GTEX-YB5K-1126-SM-H6Q6O 40-49 years, female 619.6
GTEX-178AV-1226-SM-GOR11 40-49 years, male 619.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 618.7
GTEX-X3Y1-1526-SM-H6Q6X 40-49 years, male 612.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 602.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 601.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 601.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 598.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 596.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 580.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 570.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 554.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 553.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 543.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 401.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 99.6
FF:10024-101D6 15,40,85 years, mixed 99.6

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