MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.5 nTPM
HPA Brain:248.5 nTPM
GTEx:65.5 nTPM
FANTOM5:220.8 Scaled Tags Per Million
Pig:187.9 nTPM
Mouse:262.7 nTPM
Allen mouse:7.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 248.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.5
1827 Male, age 72, unknown 255.1
2828 Female, age 72, unknown 211.9
2019 Male, age 18, unknown 198.9
1870 Female, age 42, unknown 184.0
2666 Male, age 74, left hemisphere 182.9
2411 Female, age 72, unknown 182.1
2586 Male, age 75, left hemisphere 173.1
2219 Male, age 76, both hemispheres 167.3
1833 Male, age 53, unknown 153.9
1830 Male, age 51, unknown 145.9
Dorsal raphe nucleus
nTPM: 167.5
2298 Female, age 72, unknown 214.3
2750 Male, age 76, both hemispheres 170.8
2016 Female, age 72, unknown 164.4
1828 Male, age 53, unknown 146.7
2047 Male, age 72, unknown 141.2
Inferior colliculus
nTPM: 178.7
1848 Female, age 42, unknown 194.4
2097 Female, age 72, unknown 188.8
1890 Male, age 53, unknown 176.5
2849 Male, age 72, unknown 155.2
Median raphe nucleus
nTPM: 165.5
2220 Male, age 76, midline 165.5
Periaquaductal grey, anterior
nTPM: 248.5
1795 Male, age 51, unknown 272.8
1947 Male, age 18, unknown 257.1
2502 Female, age 75, unknown 215.6
Periaquaductal grey, dorsal
nTPM: 208.8
1831 Male, age 72, unknown 236.4
2850 Male, age 76, both hemispheres 223.8
1840 Male, age 53, unknown 211.4
2464 Female, age 72, unknown 163.5
Periaquaductal grey, lateral
nTPM: 221.2
2272 Male, age 74, both hemispheres 261.3
2053 Male, age 18, unknown 221.5
2140 Male, age 76, both hemispheres 180.9
Pretectal area
nTPM: 241.4
1816 Male, age 51, unknown 349.9
1944 Female, age 72, unknown 331.1
2007 Male, age 72, unknown 294.7
1815 Male, age 53, unknown 285.2
1817 Female, age 42, unknown 254.4
2273 Male, age 74, both hemispheres 240.3
2224 Female, age 72, unknown 205.1
2667 Female, age 75, unknown 180.4
2825 Male, age 18, unknown 178.0
2316 Male, age 76, right hemisphere 173.0
2407 Male, age 75, both hemispheres 162.9
Red nucleus
nTPM: 158.8
2785 Male, age 18, unknown 193.0
2503 Female, age 72, unknown 188.3
2725 Female, age 75, unknown 181.8
1904 Male, age 53, unknown 164.7
1821 Female, age 72, unknown 160.0
1954 Female, age 42, unknown 158.4
1865 Male, age 51, unknown 156.5
2584 Male, age 75, left hemisphere 152.2
2823 Male, age 76, right hemisphere 144.2
2588 Male, age 74, left hemisphere 137.5
2227 Male, age 72, unknown 135.6
2769 Male, age 72, unknown 133.1
Substantia nigra
nTPM: 164.2
1889 Female, age 72, unknown 239.5
2590 Female, age 75, unknown 193.0
2665 Male, age 74, both hemispheres 187.2
1851 Male, age 51, unknown 163.0
2409 Female, age 72, unknown 161.1
1916 Female, age 42, unknown 160.1
2583 Male, age 75, right hemisphere 155.1
1941 Male, age 53, unknown 136.3
2241 Male, age 72, unknown 134.3
2699 Male, age 18, unknown 112.4
Superior colliculus
nTPM: 230.4
2261 Male, age 18, unknown 303.6
2087 Female, age 72, unknown 267.7
1796 Male, age 53, unknown 262.5
1995 Male, age 72, unknown 249.9
2668 Female, age 75, unknown 243.2
1913 Female, age 42, unknown 231.8
2587 Male, age 74, left hemisphere 199.9
1895 Male, age 76, right hemisphere 184.7
1839 Male, age 51, unknown 184.5
2664 Male, age 75, both hemispheres 176.0
Ventral tegmental area
nTPM: 170.7
2410 Female, age 72, unknown 210.2
2021 Male, age 53, unknown 179.6
2218 Male, age 76, both hemispheres 165.0
1915 Female, age 42, unknown 161.5
1942 Male, age 51, unknown 157.3
2223 Female, age 72, unknown 150.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.5
Samples: 183

Max nTPM: 115.0
Min nTPM: 38.9
Std nTPM: 13.0
Median nTPM: 62.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 115.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 113.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 98.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 97.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 96.3
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 93.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 93.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 91.2
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 90.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 88.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 88.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 220.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 220.8
FF:10158-103A5 76 years, female 220.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 187.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 143.0
Samples: 4

Max nTPM: 165.8
Min nTPM: 130.9
Sample A Female 165.8
Sample B Female 142.9
Sample C Male 130.9
Sample D Male 132.4
Midbrain
nTPM: 187.9
Samples: 4

Max nTPM: 242.8
Min nTPM: 124.2
Sample A Female 242.8
Sample B Female 142.8
Sample C Male 241.9
Sample D Male 124.2
Periaqueductal gray
nTPM: 137.2
Samples: 3

Max nTPM: 145.7
Min nTPM: 126.6
Sample B Female 145.7
Sample C Male 139.2
Sample D Male 126.6
Superior colliculi
nTPM: 183.6
Samples: 4

Max nTPM: 214.3
Min nTPM: 160.7
Sample A Female 162.6
Sample B Female 196.6
Sample C Male 214.3
Sample D Male 160.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 262.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 262.7
Samples: 4

Max nTPM: 270.8
Min nTPM: 257.4
Sample A Male 257.4
Sample B Male 259.0
Sample C Female 270.8
Sample D Female 263.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
79591729 Antisense, RP_071218_02_C03, Mouse strain C57BL/6J (56 days, male) 13.9
79904258 Antisense, RP_071218_02_C03, Mouse strain C57BL/6J (56 days, male) 8.9
197 Antisense, RP_Baylor_102658, Mouse strain C57BL/6J (56 days, male) 7.6
196 Antisense, RP_Baylor_102658, Mouse strain C57BL/6J (56 days, male) 4.9
195 Sense, RPS_Baylor_36960, Mouse strain C57BL/6J (56 days, male) 0.0

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