A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.4
nTPM
Monaco:
1.6
nTPM
Schmiedel:
75.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.4
HPA sample
nTPM
NK-cell nTPM: 0.4
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.0
P10809_1013
0.8
P10809_1033
0.1
P10809_1052
0.2
P10809_1071
0.7
P10809_1093
0.0
P10809_1103
0.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.6
Monaco sample
nTPM
NK-cell nTPM: 1.7
Samples: 4
Max nTPM: 2.7
Min nTPM: 0.7
RHH5316_R3683
1.6
RHH5224_R3596
0.7
RHH5253_R3625
1.6
RHH5282_R3654
2.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.3
Schmiedel sample id
TPM
NK-cell TPM: 75.3
Samples: 90
Max TPM: 126.5
Min TPM: 34.5
NK_1
126.5
NK_2
118.1
NK_3
116.4
NK_4
115.4
NK_5
112.4
NK_6
112.4
NK_7
107.8
NK_8
104.5
NK_9
104.4
NK_10
104.2
NK_11
103.0
NK_12
101.1
NK_13
100.5
NK_14
100.1
NK_15
99.9
NK_16
98.1
NK_17
97.6
NK_18
96.1
NK_19
96.0
NK_20
96.0
NK_21
94.2
NK_22
94.0
NK_23
92.9
NK_24
92.3
NK_25
92.3
NK_26
88.4
NK_27
87.7
NK_28
87.7
NK_29
86.7
NK_30
86.1
NK_31
86.0
NK_32
85.7
NK_33
85.1
NK_34
83.7
NK_35
82.7
NK_36
80.5
NK_37
79.5
NK_38
78.5
NK_39
77.2
NK_40
76.9
NK_41
76.5
NK_42
74.5
NK_43
74.3
NK_44
73.5
NK_45
73.1
NK_46
73.1
NK_47
72.8
NK_48
72.6
NK_49
72.0
NK_50
71.5
NK_51
69.5
NK_52
69.3
NK_53
69.0
NK_54
68.3
NK_55
68.1
NK_56
67.7
NK_57
66.8
NK_58
65.5
NK_59
65.2
NK_60
64.1
NK_61
63.4
NK_62
62.8
NK_63
61.4
NK_64
61.3
NK_65
60.9
NK_66
60.1
NK_67
59.2
NK_68
58.7
NK_69
58.1
NK_70
56.6
NK_71
55.3
NK_72
55.0
NK_73
53.9
NK_74
53.0
NK_75
52.1
NK_76
51.4
NK_77
51.0
NK_78
49.8
NK_79
49.6
NK_80
48.8
NK_81
48.7
NK_82
47.8
NK_83
45.9
NK_84
44.3
NK_85
43.6
NK_86
41.9
NK_87
41.7
NK_88
35.8
NK_89
35.8
NK_90
34.5
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