A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.0
nTPM
Monaco:
1.2
nTPM
Schmiedel:
76.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.0
HPA sample
nTPM
Classical monocyte nTPM: 0.5
Samples: 6
Max nTPM: 0.8
Min nTPM: 0.3
P10809_1003
0.3
P10809_1020
0.8
P10809_1039
0.5
P10809_1058
0.3
P10809_1080
0.5
P10809_1107
0.7
Intermediate monocyte nTPM: 1.0
Samples: 6
Max nTPM: 1.8
Min nTPM: 0.2
P10809_1004
1.0
P10809_1023
1.6
P10809_1042
0.9
P10809_1061
0.2
P10809_1081
0.4
P10809_1108
1.8
Non-classical monocyte nTPM: 0.8
Samples: 5
Max nTPM: 1.6
Min nTPM: 0.2
P10809_1005
1.0
P10809_1053
0.7
P10809_1072
0.2
P10809_1082
0.5
P10809_1109
1.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
Monaco sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 4
Max nTPM: 3.6
Min nTPM: 0.1
RHH5313_R3680
0.3
RHH5221_R3593
3.6
RHH5250_R3622
0.3
RHH5279_R3651
0.1
Intermediate monocyte nTPM: 1.2
Samples: 4
Max nTPM: 2.2
Min nTPM: 0.3
RHH5314_R3681
1.6
RHH5222_R3594
0.5
RHH5251_R3623
0.3
RHH5280_R3652
2.2
Non-classical monocyte nTPM: 1.3
Samples: 4
Max nTPM: 1.4
Min nTPM: 1.1
RHH5315_R3682
1.4
RHH5223_R3595
1.1
RHH5252_R3624
1.3
RHH5281_R3653
1.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.1
Schmiedel sample id
TPM
Classical monocyte TPM: 48.8
Samples: 91
Max TPM: 71.0
Min TPM: 24.9
MONOCYTES_1
71.0
MONOCYTES_2
70.7
MONOCYTES_3
69.8
MONOCYTES_4
66.4
MONOCYTES_5
64.5
MONOCYTES_6
63.0
MONOCYTES_7
62.6
MONOCYTES_8
62.2
MONOCYTES_9
61.6
MONOCYTES_10
60.8
MONOCYTES_11
60.8
MONOCYTES_12
60.5
MONOCYTES_13
60.3
MONOCYTES_14
59.9
MONOCYTES_15
59.2
MONOCYTES_16
59.1
MONOCYTES_17
58.9
MONOCYTES_18
58.9
MONOCYTES_19
58.7
MONOCYTES_20
58.6
MONOCYTES_21
58.6
MONOCYTES_22
56.9
MONOCYTES_23
56.6
MONOCYTES_24
56.6
MONOCYTES_25
56.1
MONOCYTES_26
54.8
MONOCYTES_27
54.4
MONOCYTES_28
53.8
MONOCYTES_29
53.8
MONOCYTES_30
53.3
MONOCYTES_31
53.1
MONOCYTES_32
52.9
MONOCYTES_33
52.9
MONOCYTES_34
52.4
MONOCYTES_35
52.1
MONOCYTES_36
52.0
MONOCYTES_37
52.0
MONOCYTES_38
51.0
MONOCYTES_39
51.0
MONOCYTES_40
50.7
MONOCYTES_41
50.7
MONOCYTES_42
50.6
MONOCYTES_43
50.3
MONOCYTES_44
49.9
MONOCYTES_45
49.9
MONOCYTES_46
49.6
MONOCYTES_47
49.0
MONOCYTES_48
49.0
MONOCYTES_49
48.6
MONOCYTES_50
48.1
MONOCYTES_51
47.7
MONOCYTES_52
47.7
MONOCYTES_53
47.5
MONOCYTES_54
47.2
MONOCYTES_55
46.0
MONOCYTES_56
45.3
MONOCYTES_57
45.0
MONOCYTES_58
44.8
MONOCYTES_59
44.8
MONOCYTES_60
44.0
MONOCYTES_61
42.6
MONOCYTES_62
42.5
MONOCYTES_63
42.4
MONOCYTES_64
42.4
MONOCYTES_65
41.7
MONOCYTES_66
41.7
MONOCYTES_67
41.7
MONOCYTES_68
40.5
MONOCYTES_69
40.4
MONOCYTES_70
40.3
MONOCYTES_71
39.9
MONOCYTES_72
39.0
MONOCYTES_73
38.9
MONOCYTES_74
38.8
MONOCYTES_75
38.5
MONOCYTES_76
38.4
MONOCYTES_77
38.3
MONOCYTES_78
38.3
MONOCYTES_79
37.6
MONOCYTES_80
36.6
MONOCYTES_81
36.3
MONOCYTES_82
36.2
MONOCYTES_83
35.7
MONOCYTES_84
35.4
MONOCYTES_85
35.2
MONOCYTES_86
34.9
MONOCYTES_87
34.5
MONOCYTES_88
34.0
MONOCYTES_89
28.9
MONOCYTES_90
26.4
MONOCYTES_91
24.9
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Non-classical monocyte TPM: 76.1
Samples: 90
Max TPM: 116.4
Min TPM: 35.0
M2_1
116.4
M2_2
114.7
M2_3
114.1
M2_4
113.5
M2_5
111.8
M2_6
108.8
M2_7
107.2
M2_8
106.3
M2_9
104.4
M2_10
103.7
M2_11
102.4
M2_12
101.6
M2_13
100.6
M2_14
100.3
M2_15
97.3
M2_16
96.2
M2_17
95.7
M2_18
94.0
M2_19
93.6
M2_20
93.5
M2_21
92.0
M2_22
91.9
M2_23
91.6
M2_24
90.0
M2_25
89.0
M2_26
86.9
M2_27
86.9
M2_28
86.8
M2_29
86.7
M2_30
85.8
M2_31
85.7
M2_32
85.1
M2_33
85.0
M2_34
84.6
M2_35
84.4
M2_36
83.4
M2_37
82.7
M2_38
81.7
M2_39
81.3
M2_40
81.3
M2_41
81.2
M2_42
80.6
M2_43
80.6
M2_44
80.3
M2_45
79.8
M2_46
79.4
M2_47
79.3
M2_48
77.6
M2_49
77.3
M2_50
76.7
M2_51
75.4
M2_52
75.4
M2_53
73.8
M2_54
72.9
M2_55
71.4
M2_56
71.2
M2_57
71.0
M2_58
68.9
M2_59
68.4
M2_60
66.9
M2_61
66.7
M2_62
65.8
M2_63
63.6
M2_64
63.2
M2_65
61.0
M2_66
60.7
M2_67
59.3
M2_68
58.5
M2_69
57.7
M2_70
56.6
M2_71
56.6
M2_72
56.4
M2_73
54.0
M2_74
52.4
M2_75
52.1
M2_76
50.9
M2_77
49.4
M2_78
49.3
M2_79
49.0
M2_80
47.5
M2_81
47.3
M2_82
46.6
M2_83
44.5
M2_84
42.7
M2_85
41.7
M2_86
40.1
M2_87
39.5
M2_88
37.6
M2_89
37.0
M2_90
35.0
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