MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.5 nTPM
HPA Brain:29.8 nTPM
GTEx:17.5 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:14.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.6
1870 Female, age 42, unknown 24.1
2019 Male, age 18, unknown 23.3
1827 Male, age 72, unknown 22.9
2411 Female, age 72, unknown 22.8
2666 Male, age 74, left hemisphere 22.0
1833 Male, age 53, unknown 21.2
2828 Female, age 72, unknown 20.5
1830 Male, age 51, unknown 20.3
2219 Male, age 76, both hemispheres 20.1
2586 Male, age 75, left hemisphere 18.5
Dorsal raphe nucleus
nTPM: 25.2
2047 Male, age 72, unknown 26.6
2298 Female, age 72, unknown 26.0
2750 Male, age 76, both hemispheres 25.6
2016 Female, age 72, unknown 24.7
1828 Male, age 53, unknown 23.1
Inferior colliculus
nTPM: 22.3
1890 Male, age 53, unknown 23.8
2097 Female, age 72, unknown 23.5
2849 Male, age 72, unknown 21.6
1848 Female, age 42, unknown 20.2
Median raphe nucleus
nTPM: 29.8
2220 Male, age 76, midline 29.8
Periaquaductal grey, anterior
nTPM: 23.1
1795 Male, age 51, unknown 23.7
2502 Female, age 75, unknown 23.7
1947 Male, age 18, unknown 22.0
Periaquaductal grey, dorsal
nTPM: 28.2
2850 Male, age 76, both hemispheres 36.7
1831 Male, age 72, unknown 26.6
1840 Male, age 53, unknown 25.5
2464 Female, age 72, unknown 24.0
Periaquaductal grey, lateral
nTPM: 24.7
2140 Male, age 76, both hemispheres 28.4
2053 Male, age 18, unknown 23.5
2272 Male, age 74, both hemispheres 22.2
Pretectal area
nTPM: 26.7
1816 Male, age 51, unknown 30.4
1944 Female, age 72, unknown 29.5
1815 Male, age 53, unknown 29.0
2224 Female, age 72, unknown 28.4
1817 Female, age 42, unknown 28.3
2273 Male, age 74, both hemispheres 27.5
2007 Male, age 72, unknown 27.2
2667 Female, age 75, unknown 26.3
2316 Male, age 76, right hemisphere 22.9
2407 Male, age 75, both hemispheres 22.5
2825 Male, age 18, unknown 21.9
Red nucleus
nTPM: 20.8
2725 Female, age 75, unknown 25.5
2823 Male, age 76, right hemisphere 25.1
1904 Male, age 53, unknown 22.3
1821 Female, age 72, unknown 22.1
2785 Male, age 18, unknown 21.6
2584 Male, age 75, left hemisphere 21.1
2503 Female, age 72, unknown 20.6
1865 Male, age 51, unknown 20.2
1954 Female, age 42, unknown 20.1
2769 Male, age 72, unknown 17.9
2227 Male, age 72, unknown 17.6
2588 Male, age 74, left hemisphere 15.6
Substantia nigra
nTPM: 25.5
2241 Male, age 72, unknown 32.8
1916 Female, age 42, unknown 29.7
1889 Female, age 72, unknown 28.1
2699 Male, age 18, unknown 27.0
1851 Male, age 51, unknown 26.1
2665 Male, age 74, both hemispheres 24.4
1941 Male, age 53, unknown 23.6
2409 Female, age 72, unknown 22.2
2583 Male, age 75, right hemisphere 21.9
2590 Female, age 75, unknown 19.8
Superior colliculus
nTPM: 23.0
2261 Male, age 18, unknown 25.4
2587 Male, age 74, left hemisphere 24.8
2087 Female, age 72, unknown 24.7
1796 Male, age 53, unknown 23.8
2668 Female, age 75, unknown 23.4
1913 Female, age 42, unknown 23.1
1995 Male, age 72, unknown 22.2
1895 Male, age 76, right hemisphere 21.5
2664 Male, age 75, both hemispheres 20.8
1839 Male, age 51, unknown 20.5
Ventral tegmental area
nTPM: 25.9
2218 Male, age 76, both hemispheres 27.5
1915 Female, age 42, unknown 26.4
2223 Female, age 72, unknown 26.4
1942 Male, age 51, unknown 25.9
2021 Male, age 53, unknown 25.7
2410 Female, age 72, unknown 23.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.5
Samples: 183

Max nTPM: 38.7
Min nTPM: 9.3
Std nTPM: 4.7
Median nTPM: 16.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 38.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 36.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 32.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 31.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 30.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 30.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 29.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 29.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 28.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 27.3
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.4
FF:10158-103A5 76 years, female 125.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.9
Samples: 4

Max nTPM: 17.7
Min nTPM: 15.9
Sample A Female 17.1
Sample B Female 17.7
Sample C Male 16.9
Sample D Male 15.9
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 20.9
Min nTPM: 13.8
Sample A Female 20.9
Sample B Female 15.9
Sample C Male 17.2
Sample D Male 13.8
Periaqueductal gray
nTPM: 15.1
Samples: 3

Max nTPM: 15.5
Min nTPM: 14.3
Sample B Female 15.5
Sample C Male 14.3
Sample D Male 15.5
Superior colliculi
nTPM: 16.7
Samples: 4

Max nTPM: 20.0
Min nTPM: 15.1
Sample A Female 15.9
Sample B Female 20.0
Sample C Male 15.9
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.3
Samples: 4

Max nTPM: 15.2
Min nTPM: 13.1
Sample A Male 13.1
Sample B Male 15.2
Sample C Female 15.0
Sample D Female 13.7

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