A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
71.3
nTPM
Monaco:
46.5
nTPM
Schmiedel:
25.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.3
HPA sample
nTPM
NK-cell nTPM: 71.3
Samples: 6
Max nTPM: 189.3
Min nTPM: 31.8
P10809_1013
37.2
P10809_1033
31.8
P10809_1052
49.1
P10809_1071
60.9
P10809_1093
189.3
P10809_1103
59.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.5
Monaco sample
nTPM
NK-cell nTPM: 46.5
Samples: 4
Max nTPM: 55.6
Min nTPM: 41.0
RHH5316_R3683
48.0
RHH5224_R3596
41.3
RHH5253_R3625
41.0
RHH5282_R3654
55.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Schmiedel sample id
TPM
NK-cell TPM: 25.4
Samples: 90
Max TPM: 50.3
Min TPM: 13.9
NK_1
50.3
NK_2
43.3
NK_3
42.2
NK_4
40.3
NK_5
39.0
NK_6
38.5
NK_7
37.5
NK_8
35.6
NK_9
34.5
NK_10
34.2
NK_11
33.9
NK_12
32.6
NK_13
31.7
NK_14
31.5
NK_15
30.9
NK_16
30.8
NK_17
30.2
NK_18
30.1
NK_19
29.7
NK_20
29.3
NK_21
29.1
NK_22
29.1
NK_23
28.9
NK_24
28.8
NK_25
28.6
NK_26
28.5
NK_27
28.5
NK_28
28.3
NK_29
28.3
NK_30
28.2
NK_31
28.0
NK_32
27.9
NK_33
26.9
NK_34
26.8
NK_35
26.7
NK_36
26.3
NK_37
26.3
NK_38
25.7
NK_39
25.5
NK_40
25.4
NK_41
25.3
NK_42
25.2
NK_43
24.8
NK_44
24.7
NK_45
24.6
NK_46
24.6
NK_47
24.4
NK_48
24.2
NK_49
24.2
NK_50
24.2
NK_51
24.1
NK_52
24.0
NK_53
24.0
NK_54
23.9
NK_55
23.7
NK_56
23.3
NK_57
22.9
NK_58
22.8
NK_59
22.5
NK_60
22.5
NK_61
22.2
NK_62
22.1
NK_63
21.7
NK_64
21.7
NK_65
21.4
NK_66
21.3
NK_67
20.5
NK_68
19.7
NK_69
19.6
NK_70
19.0
NK_71
19.0
NK_72
18.6
NK_73
18.3
NK_74
17.9
NK_75
17.9
NK_76
17.8
NK_77
17.7
NK_78
17.5
NK_79
17.1
NK_80
17.0
NK_81
16.9
NK_82
16.8
NK_83
16.6
NK_84
16.1
NK_85
16.1
NK_86
16.0
NK_87
15.7
NK_88
15.3
NK_89
14.0
NK_90
13.9
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