A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
94.6
nTPM
Monaco:
172.2
nTPM
Schmiedel:
72.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.6
HPA sample
nTPM
Classical monocyte nTPM: 94.6
Samples: 6
Max nTPM: 107.5
Min nTPM: 86.7
P10809_1003
90.2
P10809_1020
86.7
P10809_1039
107.5
P10809_1058
93.6
P10809_1080
100.7
P10809_1107
89.2
Intermediate monocyte nTPM: 78.0
Samples: 6
Max nTPM: 94.5
Min nTPM: 59.9
P10809_1004
66.9
P10809_1023
83.0
P10809_1042
59.9
P10809_1061
94.5
P10809_1081
81.1
P10809_1108
82.3
Non-classical monocyte nTPM: 77.6
Samples: 5
Max nTPM: 102.8
Min nTPM: 58.4
P10809_1005
61.2
P10809_1053
58.4
P10809_1072
102.8
P10809_1082
87.4
P10809_1109
78.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
172.2
Monaco sample
nTPM
Classical monocyte nTPM: 172.2
Samples: 4
Max nTPM: 196.0
Min nTPM: 127.8
RHH5313_R3680
196.0
RHH5221_R3593
190.5
RHH5250_R3622
127.8
RHH5279_R3651
174.4
Intermediate monocyte nTPM: 109.8
Samples: 4
Max nTPM: 143.5
Min nTPM: 76.3
RHH5314_R3681
110.0
RHH5222_R3594
109.4
RHH5251_R3623
76.3
RHH5280_R3652
143.5
Non-classical monocyte nTPM: 102.3
Samples: 4
Max nTPM: 120.3
Min nTPM: 89.2
RHH5315_R3682
99.4
RHH5223_R3595
89.2
RHH5252_R3624
100.2
RHH5281_R3653
120.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.7
Schmiedel sample id
TPM
Classical monocyte TPM: 72.7
Samples: 91
Max TPM: 104.5
Min TPM: 55.7
MONOCYTES_1
104.5
MONOCYTES_2
97.7
MONOCYTES_3
96.0
MONOCYTES_4
94.2
MONOCYTES_5
92.0
MONOCYTES_6
88.6
MONOCYTES_7
88.4
MONOCYTES_8
87.4
MONOCYTES_9
87.2
MONOCYTES_10
84.4
MONOCYTES_11
83.5
MONOCYTES_12
82.3
MONOCYTES_13
82.2
MONOCYTES_14
81.7
MONOCYTES_15
81.7
MONOCYTES_16
81.5
MONOCYTES_17
81.0
MONOCYTES_18
80.6
MONOCYTES_19
80.3
MONOCYTES_20
80.1
MONOCYTES_21
80.1
MONOCYTES_22
78.9
MONOCYTES_23
78.4
MONOCYTES_24
78.3
MONOCYTES_25
77.6
MONOCYTES_26
77.5
MONOCYTES_27
77.4
MONOCYTES_28
76.6
MONOCYTES_29
76.0
MONOCYTES_30
75.7
MONOCYTES_31
75.3
MONOCYTES_32
75.0
MONOCYTES_33
74.5
MONOCYTES_34
74.4
MONOCYTES_35
74.2
MONOCYTES_36
73.6
MONOCYTES_37
73.5
MONOCYTES_38
73.0
MONOCYTES_39
72.8
MONOCYTES_40
72.7
MONOCYTES_41
72.4
MONOCYTES_42
71.9
MONOCYTES_43
71.8
MONOCYTES_44
71.2
MONOCYTES_45
71.0
MONOCYTES_46
70.8
MONOCYTES_47
70.3
MONOCYTES_48
70.2
MONOCYTES_49
70.0
MONOCYTES_50
70.0
MONOCYTES_51
69.8
MONOCYTES_52
69.7
MONOCYTES_53
69.4
MONOCYTES_54
69.3
MONOCYTES_55
69.2
MONOCYTES_56
69.2
MONOCYTES_57
68.9
MONOCYTES_58
68.9
MONOCYTES_59
68.7
MONOCYTES_60
68.7
MONOCYTES_61
68.5
MONOCYTES_62
68.4
MONOCYTES_63
68.1
MONOCYTES_64
68.1
MONOCYTES_65
67.6
MONOCYTES_66
67.3
MONOCYTES_67
66.7
MONOCYTES_68
66.5
MONOCYTES_69
66.1
MONOCYTES_70
66.0
MONOCYTES_71
65.7
MONOCYTES_72
65.6
MONOCYTES_73
65.5
MONOCYTES_74
64.9
MONOCYTES_75
64.8
MONOCYTES_76
64.7
MONOCYTES_77
64.5
MONOCYTES_78
64.3
MONOCYTES_79
63.8
MONOCYTES_80
63.4
MONOCYTES_81
62.6
MONOCYTES_82
61.6
MONOCYTES_83
60.7
MONOCYTES_84
59.9
MONOCYTES_85
59.0
MONOCYTES_86
59.0
MONOCYTES_87
57.6
MONOCYTES_88
57.3
MONOCYTES_89
56.3
MONOCYTES_90
55.9
MONOCYTES_91
55.7
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Non-classical monocyte TPM: 70.4
Samples: 90
Max TPM: 116.7
Min TPM: 37.2
M2_1
116.7
M2_2
108.3
M2_3
105.3
M2_4
96.3
M2_5
92.8
M2_6
89.6
M2_7
88.6
M2_8
88.3
M2_9
87.6
M2_10
87.2
M2_11
85.9
M2_12
85.3
M2_13
85.2
M2_14
83.0
M2_15
82.4
M2_16
79.9
M2_17
79.6
M2_18
79.5
M2_19
78.9
M2_20
77.4
M2_21
77.3
M2_22
77.2
M2_23
77.2
M2_24
77.0
M2_25
76.8
M2_26
76.8
M2_27
76.6
M2_28
76.0
M2_29
76.0
M2_30
74.5
M2_31
74.3
M2_32
73.4
M2_33
73.0
M2_34
72.8
M2_35
71.7
M2_36
71.5
M2_37
71.2
M2_38
71.1
M2_39
70.6
M2_40
70.3
M2_41
70.0
M2_42
69.7
M2_43
69.7
M2_44
69.3
M2_45
69.0
M2_46
68.7
M2_47
68.7
M2_48
68.5
M2_49
68.3
M2_50
67.8
M2_51
67.7
M2_52
67.5
M2_53
66.8
M2_54
66.0
M2_55
65.8
M2_56
65.7
M2_57
65.7
M2_58
65.0
M2_59
64.9
M2_60
64.5
M2_61
64.2
M2_62
63.7
M2_63
62.9
M2_64
62.1
M2_65
61.8
M2_66
61.7
M2_67
61.6
M2_68
61.3
M2_69
61.2
M2_70
61.2
M2_71
61.2
M2_72
61.1
M2_73
59.1
M2_74
59.1
M2_75
59.1
M2_76
57.7
M2_77
57.3
M2_78
56.3
M2_79
56.1
M2_80
55.9
M2_81
55.9
M2_82
55.7
M2_83
54.9
M2_84
53.7
M2_85
53.7
M2_86
53.5
M2_87
53.4
M2_88
52.5
M2_89
49.8
M2_90
37.2
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