MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:75.9 nTPM
HPA Brain:49.9 nTPM
GTEx:75.9 nTPM
FANTOM5:82.8 Scaled Tags Per Million
Pig:173.2 nTPM
Mouse:88.9 nTPM
Allen mouse:3.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 49.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.7
2666 Male, age 74, left hemisphere 42.0
2411 Female, age 72, unknown 41.6
1827 Male, age 72, unknown 41.4
2219 Male, age 76, both hemispheres 39.7
2019 Male, age 18, unknown 39.3
1870 Female, age 42, unknown 38.9
2586 Male, age 75, left hemisphere 35.6
2828 Female, age 72, unknown 33.1
1830 Male, age 51, unknown 32.8
1833 Male, age 53, unknown 32.7
Dorsal raphe nucleus
nTPM: 39.6
1828 Male, age 53, unknown 44.2
2298 Female, age 72, unknown 43.4
2047 Male, age 72, unknown 41.1
2016 Female, age 72, unknown 35.6
2750 Male, age 76, both hemispheres 33.9
Inferior colliculus
nTPM: 39.9
2097 Female, age 72, unknown 44.1
2849 Male, age 72, unknown 41.2
1890 Male, age 53, unknown 38.1
1848 Female, age 42, unknown 36.3
Median raphe nucleus
nTPM: 49.9
2220 Male, age 76, midline 49.9
Periaquaductal grey, anterior
nTPM: 37.2
1947 Male, age 18, unknown 40.9
1795 Male, age 51, unknown 38.5
2502 Female, age 75, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 38.9
1840 Male, age 53, unknown 42.5
2850 Male, age 76, both hemispheres 42.1
2464 Female, age 72, unknown 37.1
1831 Male, age 72, unknown 33.9
Periaquaductal grey, lateral
nTPM: 35.7
2272 Male, age 74, both hemispheres 44.0
2053 Male, age 18, unknown 33.2
2140 Male, age 76, both hemispheres 29.9
Pretectal area
nTPM: 40.5
1816 Male, age 51, unknown 51.4
1817 Female, age 42, unknown 49.0
1944 Female, age 72, unknown 48.0
2007 Male, age 72, unknown 46.4
1815 Male, age 53, unknown 42.6
2224 Female, age 72, unknown 40.5
2667 Female, age 75, unknown 39.9
2273 Male, age 74, both hemispheres 36.6
2825 Male, age 18, unknown 36.1
2407 Male, age 75, both hemispheres 28.7
2316 Male, age 76, right hemisphere 26.4
Red nucleus
nTPM: 35.2
2725 Female, age 75, unknown 45.4
1821 Female, age 72, unknown 43.3
2588 Male, age 74, left hemisphere 37.6
2823 Male, age 76, right hemisphere 37.2
1954 Female, age 42, unknown 34.6
2503 Female, age 72, unknown 34.5
2785 Male, age 18, unknown 34.5
2769 Male, age 72, unknown 32.5
2227 Male, age 72, unknown 32.3
2584 Male, age 75, left hemisphere 31.3
1865 Male, age 51, unknown 31.0
1904 Male, age 53, unknown 28.8
Substantia nigra
nTPM: 48.4
1916 Female, age 42, unknown 69.6
2241 Male, age 72, unknown 58.4
1851 Male, age 51, unknown 55.1
1941 Male, age 53, unknown 53.1
1889 Female, age 72, unknown 50.0
2665 Male, age 74, both hemispheres 46.1
2699 Male, age 18, unknown 43.8
2583 Male, age 75, right hemisphere 37.8
2590 Female, age 75, unknown 35.9
2409 Female, age 72, unknown 34.2
Superior colliculus
nTPM: 36.5
2668 Female, age 75, unknown 42.1
1796 Male, age 53, unknown 41.5
2261 Male, age 18, unknown 40.0
2087 Female, age 72, unknown 38.7
2587 Male, age 74, left hemisphere 38.0
2664 Male, age 75, both hemispheres 36.1
1839 Male, age 51, unknown 34.2
1895 Male, age 76, right hemisphere 34.1
1913 Female, age 42, unknown 32.8
1995 Male, age 72, unknown 28.0
Ventral tegmental area
nTPM: 41.9
1915 Female, age 42, unknown 51.9
2410 Female, age 72, unknown 46.8
2218 Male, age 76, both hemispheres 43.4
2223 Female, age 72, unknown 37.7
1942 Male, age 51, unknown 36.2
2021 Male, age 53, unknown 35.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 75.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 75.9
Samples: 183

Max nTPM: 146.8
Min nTPM: 41.6
Std nTPM: 19.7
Median nTPM: 73.5
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 146.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 143.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 126.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 123.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 123.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 121.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 117.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 115.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 114.4
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 109.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 109.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 82.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 82.8
FF:10158-103A5 76 years, female 82.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 173.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 149.3
Samples: 4

Max nTPM: 189.1
Min nTPM: 105.6
Sample A Female 189.1
Sample B Female 105.6
Sample C Male 151.1
Sample D Male 151.3
Midbrain
nTPM: 173.2
Samples: 4

Max nTPM: 281.8
Min nTPM: 126.5
Sample A Female 281.8
Sample B Female 146.8
Sample C Male 126.5
Sample D Male 137.5
Periaqueductal gray
nTPM: 124.6
Samples: 3

Max nTPM: 129.3
Min nTPM: 117.0
Sample B Female 127.6
Sample C Male 129.3
Sample D Male 117.0
Superior colliculi
nTPM: 151.9
Samples: 4

Max nTPM: 195.1
Min nTPM: 96.5
Sample A Female 195.1
Sample B Female 96.5
Sample C Male 164.5
Sample D Male 151.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 88.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.0
Samples: 4

Max nTPM: 97.8
Min nTPM: 78.8
Sample A Male 78.8
Sample B Male 83.3
Sample C Female 97.8
Sample D Female 95.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
68795402 Antisense, RP_041116_02_H04, Mouse strain C57BL/6J (56 days, male) 3.7

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