MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.9 nTPM
HPA Brain:0.2 nTPM
GTEx:0.9 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:0.2 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 0.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.1
1870 Female, age 42, unknown 0.2
2666 Male, age 74, left hemisphere 0.2
1827 Male, age 72, unknown 0.1
2219 Male, age 76, both hemispheres 0.1
2411 Female, age 72, unknown 0.1
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
2019 Male, age 18, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.2
2298 Female, age 72, unknown 0.5
2047 Male, age 72, unknown 0.2
1828 Male, age 53, unknown 0.1
2016 Female, age 72, unknown 0.1
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.1
2849 Male, age 72, unknown 0.2
1848 Female, age 42, unknown 0.1
1890 Male, age 53, unknown 0.1
2097 Female, age 72, unknown 0.1
Median raphe nucleus
nTPM: 0.1
2220 Male, age 76, midline 0.1
Periaquaductal grey, anterior
nTPM: 0.1
1795 Male, age 51, unknown 0.1
2502 Female, age 75, unknown 0.1
1947 Male, age 18, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.1
1831 Male, age 72, unknown 0.1
1840 Male, age 53, unknown 0.1
2464 Female, age 72, unknown 0.1
2850 Male, age 76, both hemispheres 0.1
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.1
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 0.1
2007 Male, age 72, unknown 0.2
2667 Female, age 75, unknown 0.2
2825 Male, age 18, unknown 0.2
1815 Male, age 53, unknown 0.1
1816 Male, age 51, unknown 0.1
1817 Female, age 42, unknown 0.1
2224 Female, age 72, unknown 0.1
2273 Male, age 74, both hemispheres 0.1
1944 Female, age 72, unknown 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 0.1
1865 Male, age 51, unknown 0.2
1904 Male, age 53, unknown 0.2
1954 Female, age 42, unknown 0.2
2227 Male, age 72, unknown 0.1
2725 Female, age 75, unknown 0.1
2769 Male, age 72, unknown 0.1
1821 Female, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 0.2
2409 Female, age 72, unknown 1.3
2583 Male, age 75, right hemisphere 0.2
2699 Male, age 18, unknown 0.2
1851 Male, age 51, unknown 0.1
2241 Male, age 72, unknown 0.1
2590 Female, age 75, unknown 0.1
2665 Male, age 74, both hemispheres 0.1
1889 Female, age 72, unknown 0.0
1916 Female, age 42, unknown 0.0
1941 Male, age 53, unknown 0.0
Superior colliculus
nTPM: 0.1
1895 Male, age 76, right hemisphere 0.3
2664 Male, age 75, both hemispheres 0.2
1796 Male, age 53, unknown 0.1
1913 Female, age 42, unknown 0.1
1995 Male, age 72, unknown 0.1
2087 Female, age 72, unknown 0.1
2587 Male, age 74, left hemisphere 0.1
2668 Female, age 75, unknown 0.1
1839 Male, age 51, unknown 0.0
2261 Male, age 18, unknown 0.0
Ventral tegmental area
nTPM: 0.1
2021 Male, age 53, unknown 0.2
1942 Male, age 51, unknown 0.1
2218 Male, age 76, both hemispheres 0.1
1915 Female, age 42, unknown 0.0
2223 Female, age 72, unknown 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 0.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.9
Samples: 183

Max nTPM: 43.7
Min nTPM: 0.0
Std nTPM: 3.8
Median nTPM: 0.1
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 43.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 23.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 10.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 9.4
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 5.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 5.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 5.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 3.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 2.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 2.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 2.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 2.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 2.2
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 2.6
Sample C Male 2.0
Sample D Male 3.4
Midbrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 2.3
Sample C Male 1.7
Sample D Male 2.6
Periaqueductal gray
nTPM: 2.4
Samples: 3

Max nTPM: 2.9
Min nTPM: 1.8
Sample B Female 2.5
Sample C Male 1.8
Sample D Male 2.9
Superior colliculi
nTPM: 1.6
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 1.8
Sample C Male 1.9
Sample D Male 2.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.4
Sample D Female 0.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69781989 Antisense, RP_050505_02_A08, Mouse strain C57BL/6J (56 days, male) 0.7

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