MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.3 nTPM
HPA Brain:15.0 nTPM
GTEx:18.3 nTPM
FANTOM5:57.1 Scaled Tags Per Million
Mouse:33.0 nTPM
Allen mouse:1.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
1870 Female, age 42, unknown 14.6
2019 Male, age 18, unknown 14.2
2666 Male, age 74, left hemisphere 13.8
1833 Male, age 53, unknown 13.5
2586 Male, age 75, left hemisphere 13.4
2828 Female, age 72, unknown 12.8
1827 Male, age 72, unknown 11.7
1830 Male, age 51, unknown 11.4
2411 Female, age 72, unknown 11.4
2219 Male, age 76, both hemispheres 9.2
Dorsal raphe nucleus
nTPM: 12.8
2298 Female, age 72, unknown 17.0
2016 Female, age 72, unknown 13.2
1828 Male, age 53, unknown 11.6
2750 Male, age 76, both hemispheres 11.2
2047 Male, age 72, unknown 11.1
Inferior colliculus
nTPM: 12.4
2097 Female, age 72, unknown 16.0
1890 Male, age 53, unknown 12.6
2849 Male, age 72, unknown 10.6
1848 Female, age 42, unknown 10.3
Median raphe nucleus
nTPM: 12.1
2220 Male, age 76, midline 12.1
Periaquaductal grey, anterior
nTPM: 14.3
1947 Male, age 18, unknown 15.4
1795 Male, age 51, unknown 15.0
2502 Female, age 75, unknown 12.4
Periaquaductal grey, dorsal
nTPM: 11.3
1831 Male, age 72, unknown 13.5
1840 Male, age 53, unknown 12.3
2850 Male, age 76, both hemispheres 10.5
2464 Female, age 72, unknown 8.9
Periaquaductal grey, lateral
nTPM: 12.9
2272 Male, age 74, both hemispheres 14.4
2053 Male, age 18, unknown 12.2
2140 Male, age 76, both hemispheres 12.0
Pretectal area
nTPM: 13.3
1817 Female, age 42, unknown 16.2
2007 Male, age 72, unknown 15.9
1815 Male, age 53, unknown 15.0
1816 Male, age 51, unknown 14.5
2273 Male, age 74, both hemispheres 14.3
2224 Female, age 72, unknown 13.2
2667 Female, age 75, unknown 13.2
2825 Male, age 18, unknown 12.9
2407 Male, age 75, both hemispheres 12.5
1944 Female, age 72, unknown 10.9
2316 Male, age 76, right hemisphere 8.1
Red nucleus
nTPM: 13.2
1821 Female, age 72, unknown 15.4
1904 Male, age 53, unknown 14.4
2769 Male, age 72, unknown 14.2
2823 Male, age 76, right hemisphere 13.8
1865 Male, age 51, unknown 13.2
2588 Male, age 74, left hemisphere 13.2
2227 Male, age 72, unknown 13.0
2503 Female, age 72, unknown 12.9
2785 Male, age 18, unknown 12.9
2725 Female, age 75, unknown 12.5
2584 Male, age 75, left hemisphere 11.9
1954 Female, age 42, unknown 11.1
Substantia nigra
nTPM: 15.0
2409 Female, age 72, unknown 30.6
2590 Female, age 75, unknown 17.8
2583 Male, age 75, right hemisphere 15.9
1851 Male, age 51, unknown 14.1
1916 Female, age 42, unknown 12.9
2665 Male, age 74, both hemispheres 12.9
2699 Male, age 18, unknown 12.2
1889 Female, age 72, unknown 12.0
1941 Male, age 53, unknown 11.0
2241 Male, age 72, unknown 10.8
Superior colliculus
nTPM: 12.2
2587 Male, age 74, left hemisphere 15.2
1995 Male, age 72, unknown 14.5
1913 Female, age 42, unknown 13.6
2261 Male, age 18, unknown 12.6
1839 Male, age 51, unknown 12.5
2087 Female, age 72, unknown 11.8
2668 Female, age 75, unknown 11.6
1796 Male, age 53, unknown 11.5
1895 Male, age 76, right hemisphere 10.7
2664 Male, age 75, both hemispheres 8.1
Ventral tegmental area
nTPM: 12.6
1915 Female, age 42, unknown 13.9
2223 Female, age 72, unknown 13.2
2410 Female, age 72, unknown 13.1
2021 Male, age 53, unknown 12.2
2218 Male, age 76, both hemispheres 11.9
1942 Male, age 51, unknown 11.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.3
Samples: 183

Max nTPM: 36.5
Min nTPM: 5.4
Std nTPM: 4.8
Median nTPM: 18.2
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 36.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 34.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 32.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 31.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 29.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 29.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 27.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 27.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 26.7
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 25.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.1
FF:10158-103A5 76 years, female 57.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 34.3
Min nTPM: 31.3
Sample A Male 32.9
Sample B Male 33.4
Sample C Female 31.3
Sample D Female 34.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
70445520 Antisense, RP_050614_04_A06, Mouse strain C57BL/6J (56 days, male) 1.8

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