MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.4 nTPM
HPA Brain:52.4 nTPM
GTEx:98.4 nTPM
FANTOM5:64.2 Scaled Tags Per Million
Pig:38.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 44.9
2411 Female, age 72, unknown 57.0
1870 Female, age 42, unknown 52.4
1827 Male, age 72, unknown 47.7
2828 Female, age 72, unknown 46.3
1833 Male, age 53, unknown 46.0
1830 Male, age 51, unknown 44.7
2019 Male, age 18, unknown 43.9
2666 Male, age 74, left hemisphere 40.5
2219 Male, age 76, both hemispheres 37.0
2586 Male, age 75, left hemisphere 33.6
Dorsal raphe nucleus
nTPM: 49.3
2298 Female, age 72, unknown 54.5
2047 Male, age 72, unknown 54.3
2750 Male, age 76, both hemispheres 50.4
1828 Male, age 53, unknown 44.9
2016 Female, age 72, unknown 42.5
Inferior colliculus
nTPM: 41.0
1848 Female, age 42, unknown 42.7
2097 Female, age 72, unknown 41.2
1890 Male, age 53, unknown 40.5
2849 Male, age 72, unknown 39.5
Median raphe nucleus
nTPM: 48.3
2220 Male, age 76, midline 48.3
Periaquaductal grey, anterior
nTPM: 43.3
1947 Male, age 18, unknown 49.3
2502 Female, age 75, unknown 41.9
1795 Male, age 51, unknown 38.7
Periaquaductal grey, dorsal
nTPM: 40.9
2850 Male, age 76, both hemispheres 42.9
2464 Female, age 72, unknown 42.2
1840 Male, age 53, unknown 39.5
1831 Male, age 72, unknown 38.9
Periaquaductal grey, lateral
nTPM: 41.7
2272 Male, age 74, both hemispheres 42.4
2053 Male, age 18, unknown 42.3
2140 Male, age 76, both hemispheres 40.4
Pretectal area
nTPM: 44.7
2667 Female, age 75, unknown 49.6
1817 Female, age 42, unknown 48.4
2224 Female, age 72, unknown 47.8
1815 Male, age 53, unknown 46.8
2273 Male, age 74, both hemispheres 45.3
2007 Male, age 72, unknown 44.4
1944 Female, age 72, unknown 43.6
2316 Male, age 76, right hemisphere 43.3
1816 Male, age 51, unknown 42.6
2825 Male, age 18, unknown 41.8
2407 Male, age 75, both hemispheres 37.6
Red nucleus
nTPM: 48.5
1821 Female, age 72, unknown 61.5
1904 Male, age 53, unknown 55.7
1865 Male, age 51, unknown 54.1
1954 Female, age 42, unknown 50.7
2503 Female, age 72, unknown 50.1
2725 Female, age 75, unknown 48.2
2588 Male, age 74, left hemisphere 48.0
2823 Male, age 76, right hemisphere 46.7
2769 Male, age 72, unknown 46.5
2785 Male, age 18, unknown 43.8
2227 Male, age 72, unknown 43.3
2584 Male, age 75, left hemisphere 33.2
Substantia nigra
nTPM: 49.1
1916 Female, age 42, unknown 62.6
1851 Male, age 51, unknown 60.6
2699 Male, age 18, unknown 52.2
2409 Female, age 72, unknown 51.3
1889 Female, age 72, unknown 50.7
2241 Male, age 72, unknown 49.2
1941 Male, age 53, unknown 43.8
2590 Female, age 75, unknown 43.7
2583 Male, age 75, right hemisphere 38.6
2665 Male, age 74, both hemispheres 38.1
Superior colliculus
nTPM: 42.5
1913 Female, age 42, unknown 49.6
2587 Male, age 74, left hemisphere 47.1
1895 Male, age 76, right hemisphere 46.1
1796 Male, age 53, unknown 44.4
1995 Male, age 72, unknown 43.8
2668 Female, age 75, unknown 43.1
1839 Male, age 51, unknown 41.0
2261 Male, age 18, unknown 40.0
2087 Female, age 72, unknown 35.6
2664 Male, age 75, both hemispheres 34.7
Ventral tegmental area
nTPM: 52.4
2410 Female, age 72, unknown 64.3
2223 Female, age 72, unknown 54.6
1915 Female, age 42, unknown 52.8
2021 Male, age 53, unknown 49.6
2218 Male, age 76, both hemispheres 49.0
1942 Male, age 51, unknown 44.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.4
Samples: 183

Max nTPM: 191.2
Min nTPM: 53.0
Std nTPM: 22.2
Median nTPM: 93.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 191.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 186.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 182.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 161.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 145.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 145.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 144.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 143.7
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 142.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 140.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 136.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.2
FF:10158-103A5 76 years, female 64.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.3
Samples: 4

Max nTPM: 46.2
Min nTPM: 33.1
Sample A Female 46.2
Sample B Female 33.1
Sample C Male 38.7
Sample D Male 35.2
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 44.5
Min nTPM: 32.6
Sample A Female 44.5
Sample B Female 36.8
Sample C Male 33.1
Sample D Male 32.6
Periaqueductal gray
nTPM: 33.2
Samples: 3

Max nTPM: 35.6
Min nTPM: 31.3
Sample B Female 32.6
Sample C Male 35.6
Sample D Male 31.3
Superior colliculi
nTPM: 35.8
Samples: 4

Max nTPM: 39.5
Min nTPM: 32.7
Sample A Female 39.5
Sample B Female 33.3
Sample C Male 37.5
Sample D Male 32.7

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