MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:28.6 nTPM
GTEx:11.9 nTPM
FANTOM5:10.8 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:56.4 nTPM
Allen mouse:3.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.6
2586 Male, age 75, left hemisphere 27.5
2019 Male, age 18, unknown 21.5
2411 Female, age 72, unknown 20.9
2219 Male, age 76, both hemispheres 20.3
1827 Male, age 72, unknown 19.0
1833 Male, age 53, unknown 17.1
2828 Female, age 72, unknown 15.6
1830 Male, age 51, unknown 15.3
1870 Female, age 42, unknown 15.1
2666 Male, age 74, left hemisphere 13.8
Dorsal raphe nucleus
nTPM: 22.6
2298 Female, age 72, unknown 30.6
2047 Male, age 72, unknown 23.8
2750 Male, age 76, both hemispheres 22.3
2016 Female, age 72, unknown 18.6
1828 Male, age 53, unknown 17.7
Inferior colliculus
nTPM: 17.2
2097 Female, age 72, unknown 23.2
1848 Female, age 42, unknown 16.4
2849 Male, age 72, unknown 14.9
1890 Male, age 53, unknown 14.4
Median raphe nucleus
nTPM: 28.6
2220 Male, age 76, midline 28.6
Periaquaductal grey, anterior
nTPM: 19.5
1947 Male, age 18, unknown 22.9
1795 Male, age 51, unknown 18.6
2502 Female, age 75, unknown 17.0
Periaquaductal grey, dorsal
nTPM: 20.4
1840 Male, age 53, unknown 24.3
2850 Male, age 76, both hemispheres 22.2
2464 Female, age 72, unknown 19.1
1831 Male, age 72, unknown 16.1
Periaquaductal grey, lateral
nTPM: 17.3
2140 Male, age 76, both hemispheres 20.3
2272 Male, age 74, both hemispheres 16.2
2053 Male, age 18, unknown 15.5
Pretectal area
nTPM: 21.4
2007 Male, age 72, unknown 27.2
1817 Female, age 42, unknown 25.5
1815 Male, age 53, unknown 24.6
1816 Male, age 51, unknown 22.9
1944 Female, age 72, unknown 22.4
2224 Female, age 72, unknown 22.3
2667 Female, age 75, unknown 21.7
2273 Male, age 74, both hemispheres 19.9
2825 Male, age 18, unknown 17.8
2316 Male, age 76, right hemisphere 16.5
2407 Male, age 75, both hemispheres 14.7
Red nucleus
nTPM: 15.8
1821 Female, age 72, unknown 21.7
2725 Female, age 75, unknown 19.5
2785 Male, age 18, unknown 18.1
2503 Female, age 72, unknown 16.7
1954 Female, age 42, unknown 16.6
1904 Male, age 53, unknown 15.6
2823 Male, age 76, right hemisphere 15.1
1865 Male, age 51, unknown 14.8
2769 Male, age 72, unknown 13.7
2227 Male, age 72, unknown 13.4
2584 Male, age 75, left hemisphere 13.2
2588 Male, age 74, left hemisphere 11.5
Substantia nigra
nTPM: 22.4
2241 Male, age 72, unknown 31.8
1916 Female, age 42, unknown 29.9
1851 Male, age 51, unknown 26.6
1889 Female, age 72, unknown 24.4
1941 Male, age 53, unknown 23.2
2583 Male, age 75, right hemisphere 18.8
2665 Male, age 74, both hemispheres 18.6
2409 Female, age 72, unknown 18.1
2699 Male, age 18, unknown 16.6
2590 Female, age 75, unknown 15.9
Superior colliculus
nTPM: 17.3
2668 Female, age 75, unknown 20.9
2087 Female, age 72, unknown 20.0
1895 Male, age 76, right hemisphere 18.6
1796 Male, age 53, unknown 18.3
2261 Male, age 18, unknown 18.3
2664 Male, age 75, both hemispheres 16.9
2587 Male, age 74, left hemisphere 16.5
1839 Male, age 51, unknown 16.2
1995 Male, age 72, unknown 15.2
1913 Female, age 42, unknown 12.4
Ventral tegmental area
nTPM: 21.6
2218 Male, age 76, both hemispheres 24.4
1915 Female, age 42, unknown 23.9
2410 Female, age 72, unknown 22.7
1942 Male, age 51, unknown 22.2
2021 Male, age 53, unknown 21.0
2223 Female, age 72, unknown 15.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 183

Max nTPM: 27.9
Min nTPM: 1.6
Std nTPM: 5.1
Median nTPM: 11.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 27.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 27.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 26.1
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 25.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 25.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 24.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.1
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 22.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 21.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 21.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.8
FF:10158-103A5 76 years, female 10.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 18.3
Min nTPM: 5.9
Sample A Female 18.3
Sample B Female 10.8
Sample C Male 17.8
Sample D Male 5.9
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.1
Sample A Female 12.2
Sample B Female 12.1
Sample C Male 13.7
Sample D Male 11.1
Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 13.4
Min nTPM: 10.4
Sample B Female 11.4
Sample C Male 13.4
Sample D Male 10.4
Superior colliculi
nTPM: 9.5
Samples: 4

Max nTPM: 11.2
Min nTPM: 6.1
Sample A Female 11.0
Sample B Female 6.1
Sample C Male 11.2
Sample D Male 9.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 56.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.4
Samples: 4

Max nTPM: 58.2
Min nTPM: 54.9
Sample A Male 55.1
Sample B Male 54.9
Sample C Female 57.4
Sample D Female 58.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
74511956 Antisense, RP_060220_03_C08, Mouse strain C57BL/6J (56 days, male) 4.0
70298154 Antisense, RP_050602_01_C05, Mouse strain C57BL/6J (56 days, male) 3.7

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