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SLC25A6
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  • SLC25A6
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:192.4 nTPM
HPA Brain:237.5 nTPM
GTEx:192.4 nTPM
FANTOM5:220.0 Scaled Tags Per Million
Pig:506.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 208.8
2565 Male, age 75, midline 251.2
2194 Female, age 79, both hemispheres 241.2
1981 Female, age 72, midline 202.6
2816 Male, age 47, midline 189.2
2048 Male, age 55, midline 159.6
Cervical spinal cord, dorsal horn
nTPM: 183.5
2173 Female, age 72, unknown 201.6
1877 Male, age 55, unknown 188.4
2069 Male, age 47, both hemispheres 187.6
2721 Male, age 90, both hemispheres 182.5
2297 Male, age 75, both hemispheres 172.0
2296 Male, age 66, both hemispheres 169.0
Cervical spinal cord, ventral horn
nTPM: 237.5
2480 Male, age 75, both hemispheres 291.7
2809 Male, age 90, both hemispheres 273.6
2068 Male, age 55, unknown 247.1
2820 Female, age 79, both hemispheres 224.9
2295 Male, age 66, both hemispheres 200.9
2098 Female, age 72, unknown 186.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 192.4
Samples: 204

Max nTPM: 376.8
Min nTPM: 105.5
Std nTPM: 39.4
Median nTPM: 187.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 376.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 340.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 333.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 320.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 310.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 265.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 264.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 263.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 259.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 257.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 257.8
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 257.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 255.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 254.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 252.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 251.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 244.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 243.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 243.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 243.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 242.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 240.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 239.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 239.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 239.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 234.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 234.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 233.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 233.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 232.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 232.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 226.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 226.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 224.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 223.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 223.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 221.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 219.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 218.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 218.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 218.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 217.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 216.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 215.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 215.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 215.5
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 215.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 214.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 214.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 212.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 212.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 211.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 211.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 210.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 210.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 210.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 209.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 209.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 208.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 208.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 207.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 205.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 204.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 203.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 203.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 202.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 202.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 202.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 202.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 200.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 200.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 200.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 199.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 199.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 197.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 197.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 197.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 197.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 196.9
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 196.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 196.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 196.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 196.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 195.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 194.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 194.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 194.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 193.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 193.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 193.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 192.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 192.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 191.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 191.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 190.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 189.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 189.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 189.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 189.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 188.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 187.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 187.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 186.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 186.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 184.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 184.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 182.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 182.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 182.6
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 182.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 182.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 182.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 182.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 181.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 181.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 181.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 181.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 181.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 179.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 179.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 179.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 178.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 177.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 177.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 177.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 175.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 175.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 175.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 175.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 175.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 174.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 174.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 174.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 174.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 173.9
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 173.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 173.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 173.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 172.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 172.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 171.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 171.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 171.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 171.3
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 170.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 170.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 169.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 167.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 166.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 166.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 165.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 165.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 164.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 164.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 163.5
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 163.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 162.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 162.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 161.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.4
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 159.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 159.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 159.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 159.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 158.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 158.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 157.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 157.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 156.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 156.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 155.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 155.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 154.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 153.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 153.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 152.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 152.2
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 152.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 151.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 151.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 151.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 150.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 150.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 149.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 148.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 148.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 147.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 146.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 145.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 145.6
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 144.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 143.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 143.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 143.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 139.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 139.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 136.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 135.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 133.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 133.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 129.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 114.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 105.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

220.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 220.0
FF:10181-103D1 60 years, female 238.8
FF:10159-103A6 76 years, female 201.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

506.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 474.6
Samples: 4

Max nTPM: 574.3
Min nTPM: 429.0
Sample A Female 433.3
Sample B Female 429.0
Sample C Male 574.3
Sample D Male 461.8
Ventral spinal cord
nTPM: 506.7
Samples: 4

Max nTPM: 589.8
Min nTPM: 446.0
Sample A Female 446.0
Sample B Female 524.8
Sample C Male 589.8
Sample D Male 466.1

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