MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:277.4 nTPM
HPA Brain:269.7 nTPM
GTEx:277.4 nTPM
FANTOM5:233.2 Scaled Tags Per Million
Pig:679.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 269.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 242.3
2586 Male, age 75, left hemisphere 352.1
2666 Male, age 74, left hemisphere 264.1
2828 Female, age 72, unknown 244.4
2219 Male, age 76, both hemispheres 241.5
2019 Male, age 18, unknown 239.7
1827 Male, age 72, unknown 234.0
2411 Female, age 72, unknown 229.1
1833 Male, age 53, unknown 212.6
1870 Female, age 42, unknown 205.7
1830 Male, age 51, unknown 199.7
Dorsal raphe nucleus
nTPM: 231.1
1828 Male, age 53, unknown 254.0
2047 Male, age 72, unknown 248.3
2298 Female, age 72, unknown 226.0
2016 Female, age 72, unknown 220.6
2750 Male, age 76, both hemispheres 206.9
Inferior colliculus
nTPM: 232.4
1890 Male, age 53, unknown 238.7
2849 Male, age 72, unknown 235.2
1848 Female, age 42, unknown 233.5
2097 Female, age 72, unknown 222.1
Median raphe nucleus
nTPM: 221.4
2220 Male, age 76, midline 221.4
Periaquaductal grey, anterior
nTPM: 239.8
1795 Male, age 51, unknown 248.9
2502 Female, age 75, unknown 235.4
1947 Male, age 18, unknown 235.0
Periaquaductal grey, dorsal
nTPM: 214.2
1840 Male, age 53, unknown 231.0
1831 Male, age 72, unknown 222.5
2464 Female, age 72, unknown 210.7
2850 Male, age 76, both hemispheres 192.7
Periaquaductal grey, lateral
nTPM: 195.6
2272 Male, age 74, both hemispheres 201.0
2053 Male, age 18, unknown 199.8
2140 Male, age 76, both hemispheres 185.9
Pretectal area
nTPM: 233.4
2007 Male, age 72, unknown 291.6
1816 Male, age 51, unknown 276.9
1817 Female, age 42, unknown 271.1
1815 Male, age 53, unknown 237.2
1944 Female, age 72, unknown 235.9
2407 Male, age 75, both hemispheres 227.9
2667 Female, age 75, unknown 217.3
2825 Male, age 18, unknown 215.9
2316 Male, age 76, right hemisphere 215.7
2224 Female, age 72, unknown 190.8
2273 Male, age 74, both hemispheres 186.8
Red nucleus
nTPM: 237.7
2584 Male, age 75, left hemisphere 288.8
2503 Female, age 72, unknown 267.0
2588 Male, age 74, left hemisphere 254.3
1821 Female, age 72, unknown 250.4
2769 Male, age 72, unknown 241.8
2785 Male, age 18, unknown 237.3
2227 Male, age 72, unknown 234.8
2725 Female, age 75, unknown 228.1
1904 Male, age 53, unknown 227.4
1954 Female, age 42, unknown 212.9
1865 Male, age 51, unknown 211.2
2823 Male, age 76, right hemisphere 198.2
Substantia nigra
nTPM: 269.7
1916 Female, age 42, unknown 344.4
2665 Male, age 74, both hemispheres 337.9
1851 Male, age 51, unknown 286.3
2699 Male, age 18, unknown 275.9
2583 Male, age 75, right hemisphere 270.0
2590 Female, age 75, unknown 254.1
1941 Male, age 53, unknown 254.0
1889 Female, age 72, unknown 252.2
2241 Male, age 72, unknown 212.6
2409 Female, age 72, unknown 209.8
Superior colliculus
nTPM: 235.1
2664 Male, age 75, both hemispheres 292.3
2668 Female, age 75, unknown 274.5
1796 Male, age 53, unknown 263.0
2261 Male, age 18, unknown 239.4
1839 Male, age 51, unknown 227.1
2587 Male, age 74, left hemisphere 226.8
2087 Female, age 72, unknown 221.7
1895 Male, age 76, right hemisphere 207.1
1995 Male, age 72, unknown 205.5
1913 Female, age 42, unknown 193.3
Ventral tegmental area
nTPM: 237.8
1915 Female, age 42, unknown 269.2
1942 Male, age 51, unknown 244.1
2218 Male, age 76, both hemispheres 241.1
2410 Female, age 72, unknown 240.5
2223 Female, age 72, unknown 226.5
2021 Male, age 53, unknown 205.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 277.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 277.4
Samples: 183

Max nTPM: 589.7
Min nTPM: 118.2
Std nTPM: 70.4
Median nTPM: 270.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 589.7
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 451.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 433.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 422.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 417.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 408.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 407.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 406.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 405.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 405.6
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 402.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 233.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 233.2
FF:10158-103A5 76 years, female 233.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 679.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 498.9
Samples: 4

Max nTPM: 625.2
Min nTPM: 434.8
Sample A Female 625.2
Sample B Female 460.1
Sample C Male 475.4
Sample D Male 434.8
Midbrain
nTPM: 580.0
Samples: 4

Max nTPM: 635.5
Min nTPM: 528.9
Sample A Female 635.5
Sample B Female 528.9
Sample C Male 604.9
Sample D Male 550.8
Periaqueductal gray
nTPM: 435.4
Samples: 3

Max nTPM: 469.5
Min nTPM: 369.2
Sample B Female 469.5
Sample C Male 467.6
Sample D Male 369.2
Superior colliculi
nTPM: 679.9
Samples: 4

Max nTPM: 709.6
Min nTPM: 619.3
Sample A Female 709.6
Sample B Female 706.2
Sample C Male 684.3
Sample D Male 619.3

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