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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
80.6
nTPM
HPA Brain:
79.3
nTPM
GTEx:
80.6
nTPM
FANTOM5:
42.0
Scaled Tags Per Million
Pig:
30.8
nTPM
Mouse:
23.2
nTPM
Allen mouse:
3.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
79.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 77.0
2586
Male, age 75, left hemisphere
91.5
2411
Female, age 72, unknown
85.7
2666
Male, age 74, left hemisphere
80.5
1833
Male, age 53, unknown
80.4
1830
Male, age 51, unknown
76.5
2828
Female, age 72, unknown
75.6
2019
Male, age 18, unknown
74.1
1870
Female, age 42, unknown
72.6
1827
Male, age 72, unknown
70.0
2219
Male, age 76, both hemispheres
63.7
Dorsal raphe nucleus nTPM: 74.7
2047
Male, age 72, unknown
83.6
2750
Male, age 76, both hemispheres
78.6
2298
Female, age 72, unknown
73.3
1828
Male, age 53, unknown
70.8
2016
Female, age 72, unknown
67.5
Inferior colliculus nTPM: 67.4
2849
Male, age 72, unknown
70.0
1848
Female, age 42, unknown
69.4
1890
Male, age 53, unknown
69.1
2097
Female, age 72, unknown
60.9
Median raphe nucleus nTPM: 76.7
2220
Male, age 76, midline
76.7
Periaquaductal grey, anterior nTPM: 71.0
1947
Male, age 18, unknown
76.4
2502
Female, age 75, unknown
69.2
1795
Male, age 51, unknown
67.3
Periaquaductal grey, dorsal nTPM: 66.9
2464
Female, age 72, unknown
76.2
1840
Male, age 53, unknown
68.9
1831
Male, age 72, unknown
63.9
2850
Male, age 76, both hemispheres
58.5
Periaquaductal grey, lateral nTPM: 63.7
2140
Male, age 76, both hemispheres
65.8
2053
Male, age 18, unknown
65.3
2272
Male, age 74, both hemispheres
59.9
Pretectal area nTPM: 67.5
2407
Male, age 75, both hemispheres
77.7
2825
Male, age 18, unknown
73.9
2316
Male, age 76, right hemisphere
72.7
1816
Male, age 51, unknown
71.4
2007
Male, age 72, unknown
70.7
1817
Female, age 42, unknown
70.1
1815
Male, age 53, unknown
67.1
2224
Female, age 72, unknown
65.2
1944
Female, age 72, unknown
63.4
2273
Male, age 74, both hemispheres
55.9
2667
Female, age 75, unknown
54.6
Red nucleus nTPM: 73.7
2588
Male, age 74, left hemisphere
85.3
2584
Male, age 75, left hemisphere
82.4
2823
Male, age 76, right hemisphere
78.0
1865
Male, age 51, unknown
76.9
2503
Female, age 72, unknown
74.5
2227
Male, age 72, unknown
73.2
2769
Male, age 72, unknown
73.2
2785
Male, age 18, unknown
73.0
1904
Male, age 53, unknown
72.0
2725
Female, age 75, unknown
67.9
1954
Female, age 42, unknown
64.0
1821
Female, age 72, unknown
63.7
Substantia nigra nTPM: 79.3
2583
Male, age 75, right hemisphere
91.9
1916
Female, age 42, unknown
85.8
2409
Female, age 72, unknown
81.1
1851
Male, age 51, unknown
80.8
2241
Male, age 72, unknown
79.9
1941
Male, age 53, unknown
78.5
2590
Female, age 75, unknown
75.5
2665
Male, age 74, both hemispheres
75.0
2699
Male, age 18, unknown
73.9
1889
Female, age 72, unknown
70.6
Superior colliculus nTPM: 74.2
2668
Female, age 75, unknown
104.7
2664
Male, age 75, both hemispheres
79.2
1796
Male, age 53, unknown
73.1
1839
Male, age 51, unknown
72.3
1895
Male, age 76, right hemisphere
72.3
1913
Female, age 42, unknown
71.4
2087
Female, age 72, unknown
68.7
1995
Male, age 72, unknown
67.9
2261
Male, age 18, unknown
67.2
2587
Male, age 74, left hemisphere
65.1
Ventral tegmental area nTPM: 76.7
2410
Female, age 72, unknown
85.9
2223
Female, age 72, unknown
79.9
2021
Male, age 53, unknown
74.9
2218
Male, age 76, both hemispheres
74.8
1915
Female, age 42, unknown
72.6
1942
Male, age 51, unknown
72.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
80.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 80.6
Samples: 139
Max nTPM: 154.7
Min nTPM: 48.9
Std nTPM: 18.5
Median nTPM: 77.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
154.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
142.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
141.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
135.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
131.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
128.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
119.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
118.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
111.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
110.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
103.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
103.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
103.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
103.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
103.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
100.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
100.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
97.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
97.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
96.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
96.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
95.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
94.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
94.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
93.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
93.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
93.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
91.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
91.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
90.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
90.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
90.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
89.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
89.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
88.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
87.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
86.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
86.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
85.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
85.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
85.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
85.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
84.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
84.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
84.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
83.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
83.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
82.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
82.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
82.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
82.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
82.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
82.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
82.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
82.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
81.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
81.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
81.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
81.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
80.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
79.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
78.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
78.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
78.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
78.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
77.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
77.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
77.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
77.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
77.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
77.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
77.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
76.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
76.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
75.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
75.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
75.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
75.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
75.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
74.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
74.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
74.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
73.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
73.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
73.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
73.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
73.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
73.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
72.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
72.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
72.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
72.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
72.0
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
71.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
71.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
71.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
71.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
71.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
71.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
70.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
70.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
70.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
69.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
69.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
69.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
69.1
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
69.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
69.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
68.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
68.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
68.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
66.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
65.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
65.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
65.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
64.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
64.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
64.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
63.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
62.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
62.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
62.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
61.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
61.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
60.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
60.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
59.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
59.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
58.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
57.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
56.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
56.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
56.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
56.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
55.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
55.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
53.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
50.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
48.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
23.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 23.3
Samples: 4
Max nTPM: 23.7
Min nTPM: 22.2
Sample A
Male
22.2
Sample B
Male
23.6
Sample C
Female
23.5
Sample D
Female
23.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.