MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.2 nTPM
HPA Brain:204.6 nTPM
GTEx:68.2 nTPM
FANTOM5:167.4 Scaled Tags Per Million
Pig:65.3 nTPM
Mouse:28.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 204.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 177.2
2411 Female, age 72, unknown 219.0
1830 Male, age 51, unknown 204.4
1833 Male, age 53, unknown 204.0
2019 Male, age 18, unknown 194.0
2586 Male, age 75, left hemisphere 169.8
1870 Female, age 42, unknown 165.2
2828 Female, age 72, unknown 163.3
2666 Male, age 74, left hemisphere 162.2
1827 Male, age 72, unknown 145.7
2219 Male, age 76, both hemispheres 144.5
Dorsal raphe nucleus
nTPM: 150.5
2750 Male, age 76, both hemispheres 177.4
2016 Female, age 72, unknown 163.4
1828 Male, age 53, unknown 149.2
2298 Female, age 72, unknown 132.2
2047 Male, age 72, unknown 130.4
Inferior colliculus
nTPM: 150.4
2849 Male, age 72, unknown 157.1
1890 Male, age 53, unknown 156.6
1848 Female, age 42, unknown 151.3
2097 Female, age 72, unknown 136.8
Median raphe nucleus
nTPM: 121.0
2220 Male, age 76, midline 121.0
Periaquaductal grey, anterior
nTPM: 150.1
2502 Female, age 75, unknown 172.1
1947 Male, age 18, unknown 148.0
1795 Male, age 51, unknown 130.4
Periaquaductal grey, dorsal
nTPM: 144.2
2464 Female, age 72, unknown 175.6
1840 Male, age 53, unknown 141.7
2850 Male, age 76, both hemispheres 132.6
1831 Male, age 72, unknown 127.1
Periaquaductal grey, lateral
nTPM: 148.4
2053 Male, age 18, unknown 156.2
2272 Male, age 74, both hemispheres 147.6
2140 Male, age 76, both hemispheres 141.6
Pretectal area
nTPM: 159.1
2316 Male, age 76, right hemisphere 186.2
2667 Female, age 75, unknown 184.3
2407 Male, age 75, both hemispheres 182.6
1815 Male, age 53, unknown 169.6
2007 Male, age 72, unknown 160.8
1817 Female, age 42, unknown 152.4
2825 Male, age 18, unknown 149.8
2273 Male, age 74, both hemispheres 148.0
1944 Female, age 72, unknown 142.5
2224 Female, age 72, unknown 137.7
1816 Male, age 51, unknown 136.5
Red nucleus
nTPM: 204.6
1865 Male, age 51, unknown 238.0
2503 Female, age 72, unknown 236.0
1904 Male, age 53, unknown 228.4
2823 Male, age 76, right hemisphere 222.5
2588 Male, age 74, left hemisphere 211.6
2769 Male, age 72, unknown 204.6
2227 Male, age 72, unknown 203.8
1821 Female, age 72, unknown 195.6
2785 Male, age 18, unknown 193.2
2584 Male, age 75, left hemisphere 192.7
1954 Female, age 42, unknown 186.1
2725 Female, age 75, unknown 143.0
Substantia nigra
nTPM: 170.6
2409 Female, age 72, unknown 211.7
2241 Male, age 72, unknown 197.1
1851 Male, age 51, unknown 186.6
2583 Male, age 75, right hemisphere 186.3
2699 Male, age 18, unknown 182.1
2590 Female, age 75, unknown 154.2
2665 Male, age 74, both hemispheres 151.8
1889 Female, age 72, unknown 148.0
1941 Male, age 53, unknown 145.9
1916 Female, age 42, unknown 142.4
Superior colliculus
nTPM: 172.9
1913 Female, age 42, unknown 213.9
1995 Male, age 72, unknown 211.3
2668 Female, age 75, unknown 197.5
1895 Male, age 76, right hemisphere 197.2
2587 Male, age 74, left hemisphere 166.1
1839 Male, age 51, unknown 155.2
2087 Female, age 72, unknown 153.1
2261 Male, age 18, unknown 152.3
1796 Male, age 53, unknown 146.8
2664 Male, age 75, both hemispheres 135.6
Ventral tegmental area
nTPM: 161.0
2410 Female, age 72, unknown 198.6
2223 Female, age 72, unknown 172.2
1915 Female, age 42, unknown 155.6
1942 Male, age 51, unknown 154.5
2021 Male, age 53, unknown 149.0
2218 Male, age 76, both hemispheres 136.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.2
Samples: 183

Max nTPM: 162.1
Min nTPM: 30.8
Std nTPM: 24.8
Median nTPM: 61.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 162.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 151.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 150.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 145.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 132.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 131.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 128.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 122.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 120.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 119.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 114.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 167.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 167.4
FF:10158-103A5 76 years, female 167.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 65.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.1
Samples: 4

Max nTPM: 84.8
Min nTPM: 54.5
Sample A Female 61.9
Sample B Female 54.5
Sample C Male 59.2
Sample D Male 84.8
Midbrain
nTPM: 65.4
Samples: 4

Max nTPM: 92.6
Min nTPM: 52.5
Sample A Female 92.6
Sample B Female 60.5
Sample C Male 55.8
Sample D Male 52.5
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 56.3
Min nTPM: 48.0
Sample B Female 56.3
Sample C Male 48.0
Sample D Male 48.6
Superior colliculi
nTPM: 57.1
Samples: 4

Max nTPM: 61.1
Min nTPM: 50.5
Sample A Female 58.3
Sample B Female 50.5
Sample C Male 58.6
Sample D Male 61.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 30.2
Min nTPM: 26.3
Sample A Male 29.3
Sample B Male 26.3
Sample C Female 30.2
Sample D Female 28.3

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