MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:141.7 nTPM
HPA Brain:145.3 nTPM
GTEx:141.7 nTPM
FANTOM5:362.5 Scaled Tags Per Million
Pig:218.4 nTPM
Mouse:85.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 145.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.2
1870 Female, age 42, unknown 154.8
2019 Male, age 18, unknown 145.5
1833 Male, age 53, unknown 141.5
1830 Male, age 51, unknown 138.5
2411 Female, age 72, unknown 135.4
1827 Male, age 72, unknown 133.5
2828 Female, age 72, unknown 133.2
2586 Male, age 75, left hemisphere 128.4
2666 Male, age 74, left hemisphere 119.0
2219 Male, age 76, both hemispheres 112.6
Dorsal raphe nucleus
nTPM: 143.5
2298 Female, age 72, unknown 160.4
2750 Male, age 76, both hemispheres 145.1
1828 Male, age 53, unknown 143.0
2047 Male, age 72, unknown 134.7
2016 Female, age 72, unknown 134.2
Inferior colliculus
nTPM: 137.5
2097 Female, age 72, unknown 142.3
1848 Female, age 42, unknown 136.8
1890 Male, age 53, unknown 135.6
2849 Male, age 72, unknown 135.3
Median raphe nucleus
nTPM: 145.3
2220 Male, age 76, midline 145.3
Periaquaductal grey, anterior
nTPM: 136.0
1947 Male, age 18, unknown 141.4
2502 Female, age 75, unknown 140.3
1795 Male, age 51, unknown 126.2
Periaquaductal grey, dorsal
nTPM: 126.0
2850 Male, age 76, both hemispheres 139.8
1831 Male, age 72, unknown 127.5
1840 Male, age 53, unknown 121.5
2464 Female, age 72, unknown 115.1
Periaquaductal grey, lateral
nTPM: 134.2
2272 Male, age 74, both hemispheres 154.1
2140 Male, age 76, both hemispheres 128.9
2053 Male, age 18, unknown 119.6
Pretectal area
nTPM: 137.9
2273 Male, age 74, both hemispheres 150.5
1817 Female, age 42, unknown 148.5
2007 Male, age 72, unknown 146.6
2667 Female, age 75, unknown 140.5
2224 Female, age 72, unknown 140.2
1944 Female, age 72, unknown 138.1
1816 Male, age 51, unknown 136.8
1815 Male, age 53, unknown 134.9
2316 Male, age 76, right hemisphere 130.2
2825 Male, age 18, unknown 127.6
2407 Male, age 75, both hemispheres 122.8
Red nucleus
nTPM: 145.1
1821 Female, age 72, unknown 169.5
2785 Male, age 18, unknown 156.4
1904 Male, age 53, unknown 155.6
2769 Male, age 72, unknown 151.4
1865 Male, age 51, unknown 149.9
1954 Female, age 42, unknown 147.7
2227 Male, age 72, unknown 145.3
2503 Female, age 72, unknown 142.5
2725 Female, age 75, unknown 137.6
2823 Male, age 76, right hemisphere 133.0
2584 Male, age 75, left hemisphere 130.5
2588 Male, age 74, left hemisphere 121.4
Substantia nigra
nTPM: 137.1
1916 Female, age 42, unknown 157.5
1889 Female, age 72, unknown 145.9
1851 Male, age 51, unknown 145.4
2665 Male, age 74, both hemispheres 143.7
1941 Male, age 53, unknown 139.3
2583 Male, age 75, right hemisphere 137.5
2699 Male, age 18, unknown 132.7
2590 Female, age 75, unknown 132.4
2241 Male, age 72, unknown 122.5
2409 Female, age 72, unknown 114.6
Superior colliculus
nTPM: 135.6
1913 Female, age 42, unknown 148.4
2587 Male, age 74, left hemisphere 145.4
1995 Male, age 72, unknown 143.5
2668 Female, age 75, unknown 139.0
1796 Male, age 53, unknown 137.6
2261 Male, age 18, unknown 136.8
1839 Male, age 51, unknown 132.8
1895 Male, age 76, right hemisphere 128.2
2087 Female, age 72, unknown 126.6
2664 Male, age 75, both hemispheres 117.5
Ventral tegmental area
nTPM: 137.0
2223 Female, age 72, unknown 149.9
2410 Female, age 72, unknown 143.2
1915 Female, age 42, unknown 140.4
2218 Male, age 76, both hemispheres 132.9
1942 Male, age 51, unknown 131.9
2021 Male, age 53, unknown 124.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 141.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.7
Samples: 183

Max nTPM: 311.7
Min nTPM: 89.4
Std nTPM: 29.6
Median nTPM: 135.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 311.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 255.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 247.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 232.1
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 225.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 221.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 217.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 207.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 207.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 204.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 195.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 362.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 362.5
FF:10158-103A5 76 years, female 362.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 218.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 187.4
Samples: 4

Max nTPM: 215.7
Min nTPM: 169.1
Sample A Female 215.7
Sample B Female 169.1
Sample C Male 178.0
Sample D Male 186.9
Midbrain
nTPM: 198.8
Samples: 4

Max nTPM: 279.8
Min nTPM: 167.5
Sample A Female 279.8
Sample B Female 177.0
Sample C Male 171.0
Sample D Male 167.5
Periaqueductal gray
nTPM: 171.8
Samples: 3

Max nTPM: 182.6
Min nTPM: 160.5
Sample B Female 172.2
Sample C Male 182.6
Sample D Male 160.5
Superior colliculi
nTPM: 218.4
Samples: 4

Max nTPM: 253.2
Min nTPM: 185.8
Sample A Female 253.2
Sample B Female 233.2
Sample C Male 201.3
Sample D Male 185.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 85.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.1
Samples: 4

Max nTPM: 90.2
Min nTPM: 82.9
Sample A Male 90.2
Sample B Male 83.4
Sample C Female 82.9
Sample D Female 84.0

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