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  • PCBP1
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:179.8 nTPM
HPA Brain:182.1 nTPM
GTEx:179.8 nTPM
FANTOM5:315.7 Scaled Tags Per Million
Pig:247.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 161.9
1981 Female, age 72, midline 197.1
2565 Male, age 75, midline 172.4
2194 Female, age 79, both hemispheres 152.7
2816 Male, age 47, midline 144.4
2048 Male, age 55, midline 142.7
Cervical spinal cord, dorsal horn
nTPM: 182.1
2173 Female, age 72, unknown 218.5
2296 Male, age 66, both hemispheres 213.6
2069 Male, age 47, both hemispheres 199.4
1877 Male, age 55, unknown 162.0
2297 Male, age 75, both hemispheres 154.6
2721 Male, age 90, both hemispheres 144.7
Cervical spinal cord, ventral horn
nTPM: 172.8
2098 Female, age 72, unknown 219.0
2809 Male, age 90, both hemispheres 189.8
2480 Male, age 75, both hemispheres 166.1
2068 Male, age 55, unknown 161.4
2295 Male, age 66, both hemispheres 161.3
2820 Female, age 79, both hemispheres 139.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 179.8
Samples: 204

Max nTPM: 394.0
Min nTPM: 119.4
Std nTPM: 34.2
Median nTPM: 174.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 394.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 317.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 294.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 293.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 283.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 267.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 267.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 266.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 242.8
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 241.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 236.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 233.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 232.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 229.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 229.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 223.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 220.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 217.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 216.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 216.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 215.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 213.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 212.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 212.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 208.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 208.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 205.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 204.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 204.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 203.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 202.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 201.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 201.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 200.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 200.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 199.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 198.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 198.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 198.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 198.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 197.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 197.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 197.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 197.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 195.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 195.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 194.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 194.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 193.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 193.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 191.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 190.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 190.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 190.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 187.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 186.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 186.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 186.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 186.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 185.9
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 185.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 185.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 185.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 185.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 185.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 184.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 184.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 184.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 183.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 183.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 183.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 183.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 182.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 182.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 182.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 181.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 181.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 181.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 181.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 180.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 179.9
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 179.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 179.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 178.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 178.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 178.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 178.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 177.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 176.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 176.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 176.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 176.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 176.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 176.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 176.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 175.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 175.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 175.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 174.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 174.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 174.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 174.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 173.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 173.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 173.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 172.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 172.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 171.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 171.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 171.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 170.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 170.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 170.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 170.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 170.5
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 170.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 169.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 169.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 169.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 169.3
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 169.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 169.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 168.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 168.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 168.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 167.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 167.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 167.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 166.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 166.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 165.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 164.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 164.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 164.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 164.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 163.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 163.7
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 163.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 163.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 163.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 163.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 163.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 163.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 162.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 162.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 162.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 162.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 161.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 161.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 161.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 161.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 161.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 161.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 161.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 159.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 159.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 158.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 158.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 157.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 157.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 157.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 155.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 154.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 154.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 153.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 153.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 153.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 152.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 151.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 151.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 151.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 151.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 151.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 150.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 150.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 149.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 149.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 148.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 147.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 146.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 146.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 146.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 146.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 145.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 145.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 144.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 143.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 141.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 140.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 140.1
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 139.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 138.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 138.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 137.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 136.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 134.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 133.4
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 132.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 126.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 126.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 124.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 119.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

315.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 315.7
FF:10181-103D1 60 years, female 357.6
FF:10159-103A6 76 years, female 273.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 230.0
Samples: 4

Max nTPM: 291.9
Min nTPM: 200.2
Sample A Female 200.2
Sample B Female 207.3
Sample C Male 291.9
Sample D Male 220.5
Ventral spinal cord
nTPM: 247.9
Samples: 4

Max nTPM: 279.1
Min nTPM: 221.4
Sample A Female 246.2
Sample B Female 245.0
Sample C Male 279.1
Sample D Male 221.4

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