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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:319.4 nTPM
HPA Brain:87.2 nTPM
GTEx:319.4 nTPM
FANTOM5:220.6 Scaled Tags Per Million
Pig:151.1 nTPM
Mouse:411.9 nTPM
Allen mouse:10.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.2
Sample id Sample description nTPM
Amygdala
nTPM: 87.2
2814 Male, age 76, right hemisphere 98.8
2514 Male, age 75, right hemisphere 92.3
2517 Female, age 94, left hemisphere 85.3
1987 Female, age 91, left hemisphere 83.1
2695 Female, age 67, right hemisphere 76.6
Basal amygdala
nTPM: 73.2
2685 Female, age 94, left hemisphere 84.2
2110 Male, age 80, left hemisphere 80.1
2609 Male, age 75, right hemisphere 79.9
2827 Female, age 67, right hemisphere 70.4
2243 Female, age 91, right hemisphere 62.6
1955 Male, age 76, both hemispheres 62.2
Central amygdala
nTPM: 80.1
2826 Female, age 94, left hemisphere 113.6
1905 Male, age 76, both hemispheres 87.7
2515 Male, age 75, right hemisphere 87.6
2239 Male, age 80, left hemisphere 57.9
2701 Female, age 91, right hemisphere 53.9
Corticomedial amygdala
nTPM: 71.9
2428 Male, age 75, right hemisphere 95.3
2829 Male, age 80, left hemisphere 87.7
2429 Female, age 94, left hemisphere 76.1
2242 Female, age 91, right hemisphere 62.6
2240 Male, age 76, both hemispheres 57.6
2535 Female, age 67, right hemisphere 52.4
Lateral amygdala
nTPM: 77.1
2534 Female, age 94, left hemisphere 97.6
2516 Male, age 75, right hemisphere 97.2
1883 Male, age 76, both hemispheres 88.5
2830 Female, age 67, right hemisphere 73.9
2256 Male, age 80, left hemisphere 54.3
2255 Female, age 91, right hemisphere 51.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 319.4
Samples: 181

Max nTPM: 1350.9
Min nTPM: 158.7
Std nTPM: 137.5
Median nTPM: 289.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1350.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 834.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 818.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 660.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 657.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 647.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 628.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 594.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 533.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 525.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 524.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 521.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 509.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 483.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 479.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 471.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 466.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 465.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 462.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 456.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 438.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 435.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 426.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 422.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 421.7
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 421.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 418.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 415.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 410.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 406.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 402.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 401.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 399.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 399.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 395.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 392.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 391.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 388.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 387.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 381.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 380.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 378.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 370.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 367.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 365.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 364.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 363.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 362.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 362.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 358.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 353.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 350.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 348.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 348.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 346.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 336.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 335.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 333.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 330.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 328.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 328.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 327.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 325.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 320.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 319.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 319.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 318.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 315.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 315.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 309.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 308.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 307.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 306.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 305.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 305.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 305.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 303.9
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 301.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 300.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 299.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 299.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 299.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 298.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 297.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 297.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 293.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 293.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 293.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 292.5
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 292.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 289.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 288.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 286.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 286.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 286.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 285.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 285.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 283.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 283.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 280.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 279.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 277.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 277.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 276.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 275.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 269.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 269.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 267.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 267.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 265.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 264.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 263.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 263.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 261.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 258.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 258.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 257.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 254.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 254.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 253.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 253.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 252.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 249.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 249.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 248.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 247.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 246.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 246.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 245.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 244.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 239.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 238.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 238.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 236.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 235.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 235.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 234.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 233.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 233.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 232.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 231.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 228.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 226.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 225.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 221.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 221.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 221.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 220.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 220.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 218.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 218.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 216.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 214.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 214.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 210.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 209.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 206.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 204.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 203.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 201.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 200.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 197.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 196.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 195.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 195.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 194.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 193.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 193.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 193.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 192.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 191.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 191.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 191.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 187.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 184.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 182.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 181.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 175.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 169.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 169.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 158.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

220.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 220.6
FF:10151-102I7 76 years, female 220.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.1
Pig sample Sample description nTPM
Amygdala
nTPM: 151.1
Samples: 4

Max nTPM: 217.9
Min nTPM: 123.6
Sample A Female 217.9
Sample B Female 131.0
Sample C Male 131.7
Sample D Male 123.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

411.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 411.9
Samples: 4

Max nTPM: 427.2
Min nTPM: 401.3
Sample A Male 401.3
Sample B Male 417.7
Sample C Female 427.2
Sample D Female 401.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.0
69735001 Antisense, RP_050503_01_H04, Mouse strain C57BL/6J (56 days, male) 12.2
73520984 Antisense, RP_051101_02_G03, Mouse strain C57BL/6J (56 days, male) 7.8

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