HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:267.0 nTPM
HPA Brain:107.9 nTPM
GTEx:267.0 nTPM
FANTOM5:236.5 Scaled Tags Per Million
Pig:284.3 nTPM
Mouse:392.4 nTPM
Allen mouse:9.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044577
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 107.9
Sample id Sample description nTPM
Hippocampus
nTPM: 79.1
1898 Male, age 80, left hemisphere 133.6
2529 Female, age 94, left hemisphere 74.3
1855 Male, age 76, left hemisphere 71.5
1911 Female, age 85, right hemisphere 68.4
2621 Female, age 67, right hemisphere 63.9
2148 Female, age 91, left hemisphere 62.7
Dentate gyrus
nTPM: 84.2
2010 Male, age 76, both hemispheres 113.0
1927 Female, age 91, both hemispheres 102.1
2530 Female, age 94, left hemisphere 88.8
2528 Male, age 74, both hemispheres 75.6
2246 Female, age 85, both hemispheres 65.7
2531 Female, age 67, both hemispheres 60.1
Entorhinal gyrus
nTPM: 80.6
2764 Male, age 80, right hemisphere 97.7
1938 Female, age 85, left hemisphere 93.6
1787 Male, age 76, left hemisphere 83.1
2686 Male, age 75, right hemisphere 73.0
2613 Female, age 94, left hemisphere 72.1
2117 Female, age 91, right hemisphere 63.9
Hippocampus, CA1
nTPM: 98.3
2749 Male, age 80, left hemisphere 159.9
2045 Male, age 76, both hemispheres 93.1
1873 Female, age 85, both hemispheres 88.7
2527 Male, age 74, both hemispheres 76.2
2082 Female, age 91, right hemisphere 73.6
Hippocampus, CA2
nTPM: 98.2
1963 Male, age 80, left hemisphere 135.3
1892 Male, age 76, both hemispheres 125.5
2249 Male, age 74, both hemispheres 101.6
2437 Female, age 94, left hemisphere 82.4
1940 Female, age 85, left hemisphere 73.9
2113 Female, age 91, right hemisphere 70.2
Hippocampus, CA3
nTPM: 89.3
1867 Male, age 76, both hemispheres 113.0
2137 Male, age 80, left hemisphere 108.0
2436 Male, age 74, both hemispheres 106.0
1891 Female, age 85, both hemispheres 86.8
2620 Female, age 94, left hemisphere 63.8
2861 Female, age 67, both hemispheres 58.1
Parahippocampal cortex
nTPM: 82.5
1850 Male, age 80, both hemispheres 123.5
1990 Female, age 91, right hemisphere 98.4
2018 Male, age 76, both hemispheres 95.3
1933 Female, age 85, both hemispheres 91.5
2250 Female, age 67, right hemisphere 79.6
2532 Female, age 72, left hemisphere 75.2
2693 Female, age 94, both hemispheres 73.4
2245 Female, age 91, both hemispheres 72.4
2692 Male, age 74, both hemispheres 63.5
2622 Female, age 67, right hemisphere 52.4
Perirhinal gyrus
nTPM: 107.9
1847 Female, age 91, left hemisphere 129.3
1794 Male, age 80, right hemisphere 122.7
1841 Female, age 85, right hemisphere 116.2
2848 Male, age 76, right hemisphere 92.8
2521 Female, age 94, right hemisphere 78.4
Subiculum
nTPM: 80.7
1901 Male, age 80, both hemispheres 99.6
1977 Female, age 85, both hemispheres 94.8
2438 Female, age 94, left hemisphere 87.8
2042 Male, age 76, both hemispheres 75.3
2619 Male, age 74, both hemispheres 64.0
2729 Female, age 91, right hemisphere 62.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 267.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 267.0
Samples: 255

Max nTPM: 921.5
Min nTPM: 141.7
Std nTPM: 93.1
Median nTPM: 245.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 921.5
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 627.2
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 606.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 514.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 476.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 469.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 454.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 452.3
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 447.8
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 442.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 437.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 236.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 236.5
FF:10169-103B7 60 years, female 302.2
FF:10153-102I9 76 years, female 170.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 284.3
Pig sample Sample description nTPM
Subiculum
nTPM: 220.4
Samples: 4

Max nTPM: 306.6
Min nTPM: 179.8
Sample A Female 306.6
Sample B Female 179.8
Sample C Male 194.4
Sample D Male 200.7
Dorsal hippocampus
nTPM: 284.3
Samples: 4

Max nTPM: 387.9
Min nTPM: 185.4
Sample A Female 387.9
Sample B Female 258.8
Sample C Male 304.9
Sample D Male 185.4
Entorhinal cortex
nTPM: 273.9
Samples: 4

Max nTPM: 322.1
Min nTPM: 230.6
Sample A Female 294.3
Sample B Female 322.1
Sample C Male 248.7
Sample D Male 230.6
Ventral hippocampus
nTPM: 216.3
Samples: 4

Max nTPM: 262.2
Min nTPM: 171.1
Sample A Female 262.2
Sample B Female 171.1
Sample C Male 200.9
Sample D Male 231.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 392.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 364.4
Samples: 4

Max nTPM: 390.7
Min nTPM: 334.0
Sample A Male 343.9
Sample B Male 389.0
Sample C Female 390.7
Sample D Female 334.0
Hippocampal formation
nTPM: 392.4
Samples: 4

Max nTPM: 440.8
Min nTPM: 358.3
Sample A Male 440.8
Sample B Male 382.6
Sample C Female 358.3
Sample D Female 387.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 9.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.6
69735001 Antisense, RP_050503_01_H04, Mouse strain C57BL/6J (56 days, male) 10.2
73520984 Antisense, RP_051101_02_G03, Mouse strain C57BL/6J (56 days, male) 9.0

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