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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:438.2 nTPM
HPA Brain:130.9 nTPM
GTEx:438.2 nTPM
FANTOM5:628.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.9
Sample id Sample description nTPM
Amygdala
nTPM: 130.9
2814 Male, age 76, right hemisphere 172.8
2695 Female, age 67, right hemisphere 159.4
1987 Female, age 91, left hemisphere 121.6
2514 Male, age 75, right hemisphere 107.9
2517 Female, age 94, left hemisphere 92.8
Basal amygdala
nTPM: 88.1
2609 Male, age 75, right hemisphere 143.1
2110 Male, age 80, left hemisphere 104.5
1955 Male, age 76, both hemispheres 91.4
2243 Female, age 91, right hemisphere 75.7
2685 Female, age 94, left hemisphere 65.1
2827 Female, age 67, right hemisphere 48.9
Central amygdala
nTPM: 100.6
1905 Male, age 76, both hemispheres 130.7
2515 Male, age 75, right hemisphere 117.1
2239 Male, age 80, left hemisphere 87.9
2701 Female, age 91, right hemisphere 86.6
2826 Female, age 94, left hemisphere 80.6
Corticomedial amygdala
nTPM: 86.7
2428 Male, age 75, right hemisphere 135.1
2829 Male, age 80, left hemisphere 118.0
2429 Female, age 94, left hemisphere 89.8
2242 Female, age 91, right hemisphere 63.4
2240 Male, age 76, both hemispheres 60.1
2535 Female, age 67, right hemisphere 53.6
Lateral amygdala
nTPM: 84.0
1883 Male, age 76, both hemispheres 114.5
2516 Male, age 75, right hemisphere 111.5
2256 Male, age 80, left hemisphere 83.2
2255 Female, age 91, right hemisphere 73.0
2830 Female, age 67, right hemisphere 63.1
2534 Female, age 94, left hemisphere 58.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

438.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 438.2
Samples: 181

Max nTPM: 1234.3
Min nTPM: 132.8
Std nTPM: 242.4
Median nTPM: 380.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 1234.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1230.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1229.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1188.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1151.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1117.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1011.0
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 958.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 943.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 934.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 930.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 927.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 920.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 895.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 883.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 839.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 802.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 782.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 777.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 764.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 751.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 720.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 718.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 717.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 714.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 692.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 681.2
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 667.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 662.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 650.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 645.8
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 637.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 635.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 632.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 611.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 610.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 608.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 595.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 592.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 592.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 586.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 563.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 549.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 538.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 531.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 522.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 518.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 499.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 493.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 490.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 489.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 488.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 484.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 481.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 477.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 477.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 475.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 475.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 474.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 472.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 462.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 457.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 454.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 447.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 444.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 444.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 444.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 443.3
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 438.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 436.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 434.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 434.0
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 429.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 428.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 427.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 426.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 417.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 416.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 409.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 404.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 403.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 395.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 392.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 390.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 388.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 388.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 386.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 382.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 382.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 380.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 380.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 377.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 376.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 376.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 374.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 373.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 373.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 372.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 371.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 364.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 360.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 352.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 350.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 347.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 347.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 339.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 335.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 332.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 328.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 326.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 320.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 318.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 317.0
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 315.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 313.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 310.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 309.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 306.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 305.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 305.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 305.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 294.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 289.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 288.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 287.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 280.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 276.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 275.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 272.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 267.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 266.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 266.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 265.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 265.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 265.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 263.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 262.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 260.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 259.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 258.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 258.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 258.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 254.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 253.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 251.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 251.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 246.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 243.6
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 239.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 237.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 233.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 232.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 229.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 222.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 220.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 217.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 216.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 213.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 209.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 207.4
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 199.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 198.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 198.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 198.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 196.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 196.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 180.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 173.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 167.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 162.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 161.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 159.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 158.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 157.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 156.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 149.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 149.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 145.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 142.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 139.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 132.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

628.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 628.8
FF:10151-102I7 76 years, female 628.8

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