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  • MT1E
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:251.9 nTPM
HPA Brain:137.9 nTPM
GTEx:251.9 nTPM
FANTOM5:1499.6 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

137.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 114.3
2048 Male, age 55, midline 157.9
1981 Female, age 72, midline 148.9
2565 Male, age 75, midline 94.6
2194 Female, age 79, both hemispheres 86.8
2816 Male, age 47, midline 83.2
Cervical spinal cord, dorsal horn
nTPM: 105.1
2173 Female, age 72, unknown 137.4
2721 Male, age 90, both hemispheres 121.7
2069 Male, age 47, both hemispheres 109.8
1877 Male, age 55, unknown 107.5
2297 Male, age 75, both hemispheres 92.5
2296 Male, age 66, both hemispheres 61.6
Cervical spinal cord, ventral horn
nTPM: 137.9
2098 Female, age 72, unknown 205.2
2809 Male, age 90, both hemispheres 156.7
2480 Male, age 75, both hemispheres 154.9
2295 Male, age 66, both hemispheres 148.8
2068 Male, age 55, unknown 93.9
2820 Female, age 79, both hemispheres 68.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

251.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 251.9
Samples: 204

Max nTPM: 873.1
Min nTPM: 57.6
Std nTPM: 161.2
Median nTPM: 196.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 873.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 802.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 761.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 741.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 727.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 671.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 664.8
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 663.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 658.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 650.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 606.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 587.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 586.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 543.6
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 527.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 527.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 523.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 490.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 485.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 465.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 465.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 461.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 448.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 443.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 439.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 437.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 436.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 429.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 426.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 416.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 415.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 398.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 395.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 394.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 393.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 386.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 386.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 376.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 376.0
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 376.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 367.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 365.7
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 365.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 356.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 347.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 344.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 337.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 336.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 334.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 331.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 331.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 327.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 325.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 325.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 318.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 313.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 308.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 303.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 293.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 292.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 290.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 289.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 288.0
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 287.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 284.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 282.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 279.5
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 276.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 275.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 269.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 269.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 258.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 258.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 256.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 255.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 253.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 251.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 245.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 244.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 239.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 238.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 237.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 236.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 236.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 222.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 222.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 219.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 218.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 216.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 215.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 214.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 212.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 209.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 207.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 207.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 206.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 204.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 201.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 200.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 197.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 197.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 196.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 196.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 195.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 194.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 194.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 190.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 187.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 187.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 187.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 185.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 184.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 182.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 182.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 181.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 177.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 177.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 175.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 173.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 173.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 173.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 170.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 169.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 168.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 167.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 166.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 165.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 165.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 163.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 163.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 160.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 159.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 158.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 157.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 157.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 157.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 156.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 155.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 151.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 151.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 151.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 149.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 147.2
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 144.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 143.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 143.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 142.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 140.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 139.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 139.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 137.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 135.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 135.6
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 134.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 133.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 133.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 132.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 130.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 129.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 128.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 127.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 126.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 126.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 124.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 122.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 119.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 117.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 116.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 115.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 115.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 115.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 113.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 111.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 110.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 108.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 108.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 107.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 104.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 104.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 104.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 103.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 103.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 102.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 102.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 101.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 100.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 99.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 98.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 97.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 95.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 94.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 93.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 93.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 89.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 89.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 89.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 88.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 84.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 84.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 83.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 81.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 74.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 72.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 57.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1499.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1499.6
FF:10181-103D1 60 years, female 2027.8
FF:10159-103A6 76 years, female 971.3

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KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

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