MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:767.2 nTPM
HPA Brain:189.6 nTPM
GTEx:767.2 nTPM
FANTOM5:643.8 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 189.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 120.2
2586 Male, age 75, left hemisphere 172.9
2828 Female, age 72, unknown 145.5
1833 Male, age 53, unknown 137.5
1827 Male, age 72, unknown 129.8
1870 Female, age 42, unknown 126.6
1830 Male, age 51, unknown 116.8
2411 Female, age 72, unknown 112.6
2666 Male, age 74, left hemisphere 93.8
2019 Male, age 18, unknown 91.7
2219 Male, age 76, both hemispheres 75.2
Dorsal raphe nucleus
nTPM: 171.4
2016 Female, age 72, unknown 204.7
1828 Male, age 53, unknown 200.1
2047 Male, age 72, unknown 174.1
2298 Female, age 72, unknown 144.9
2750 Male, age 76, both hemispheres 133.0
Inferior colliculus
nTPM: 166.5
1848 Female, age 42, unknown 192.4
2097 Female, age 72, unknown 171.4
1890 Male, age 53, unknown 156.0
2849 Male, age 72, unknown 146.1
Median raphe nucleus
nTPM: 147.0
2220 Male, age 76, midline 147.0
Periaquaductal grey, anterior
nTPM: 138.8
1795 Male, age 51, unknown 146.7
2502 Female, age 75, unknown 145.5
1947 Male, age 18, unknown 124.1
Periaquaductal grey, dorsal
nTPM: 176.4
2850 Male, age 76, both hemispheres 264.7
1840 Male, age 53, unknown 192.3
2464 Female, age 72, unknown 132.9
1831 Male, age 72, unknown 115.6
Periaquaductal grey, lateral
nTPM: 189.6
2140 Male, age 76, both hemispheres 254.5
2053 Male, age 18, unknown 179.3
2272 Male, age 74, both hemispheres 135.0
Pretectal area
nTPM: 148.7
2316 Male, age 76, right hemisphere 210.2
2273 Male, age 74, both hemispheres 202.6
2667 Female, age 75, unknown 173.5
1944 Female, age 72, unknown 172.4
2825 Male, age 18, unknown 149.7
1816 Male, age 51, unknown 145.5
1817 Female, age 42, unknown 144.4
2224 Female, age 72, unknown 137.4
1815 Male, age 53, unknown 112.9
2007 Male, age 72, unknown 95.3
2407 Male, age 75, both hemispheres 92.3
Red nucleus
nTPM: 152.8
1821 Female, age 72, unknown 193.3
2227 Male, age 72, unknown 192.2
2769 Male, age 72, unknown 187.6
2823 Male, age 76, right hemisphere 179.6
1954 Female, age 42, unknown 177.7
2503 Female, age 72, unknown 164.6
2725 Female, age 75, unknown 161.1
1904 Male, age 53, unknown 139.5
1865 Male, age 51, unknown 131.3
2588 Male, age 74, left hemisphere 122.2
2785 Male, age 18, unknown 100.9
2584 Male, age 75, left hemisphere 84.2
Substantia nigra
nTPM: 188.0
2699 Male, age 18, unknown 344.9
1916 Female, age 42, unknown 243.5
1851 Male, age 51, unknown 203.9
2409 Female, age 72, unknown 202.9
2241 Male, age 72, unknown 199.2
1889 Female, age 72, unknown 165.8
2590 Female, age 75, unknown 163.0
2665 Male, age 74, both hemispheres 126.8
1941 Male, age 53, unknown 121.9
2583 Male, age 75, right hemisphere 108.3
Superior colliculus
nTPM: 135.7
1995 Male, age 72, unknown 158.6
1796 Male, age 53, unknown 152.8
2087 Female, age 72, unknown 151.4
2261 Male, age 18, unknown 142.3
1839 Male, age 51, unknown 140.8
2587 Male, age 74, left hemisphere 136.0
1913 Female, age 42, unknown 129.3
1895 Male, age 76, right hemisphere 120.0
2664 Male, age 75, both hemispheres 119.5
2668 Female, age 75, unknown 106.6
Ventral tegmental area
nTPM: 163.4
2410 Female, age 72, unknown 194.6
2021 Male, age 53, unknown 186.6
2218 Male, age 76, both hemispheres 174.2
1915 Female, age 42, unknown 159.4
1942 Male, age 51, unknown 142.2
2223 Female, age 72, unknown 123.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 767.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 767.2
Samples: 183

Max nTPM: 2832.2
Min nTPM: 86.9
Std nTPM: 535.9
Median nTPM: 607.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 2832.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2730.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2724.3
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 2258.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 2103.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 2039.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1980.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1965.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1896.8
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1891.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1876.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 643.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 643.8
FF:10158-103A5 76 years, female 643.8

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