MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.7 nTPM
HPA Brain:82.5 nTPM
GTEx:22.7 nTPM
FANTOM5:22.2 Scaled Tags Per Million
Pig:60.5 nTPM
Mouse:26.0 nTPM
Allen mouse:4.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 82.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.1
2586 Male, age 75, left hemisphere 79.7
2019 Male, age 18, unknown 75.6
2828 Female, age 72, unknown 74.6
1827 Male, age 72, unknown 71.6
2219 Male, age 76, both hemispheres 65.9
2666 Male, age 74, left hemisphere 59.5
1833 Male, age 53, unknown 54.2
1830 Male, age 51, unknown 52.0
2411 Female, age 72, unknown 51.8
1870 Female, age 42, unknown 46.4
Dorsal raphe nucleus
nTPM: 42.9
2750 Male, age 76, both hemispheres 48.9
1828 Male, age 53, unknown 45.7
2298 Female, age 72, unknown 43.7
2047 Male, age 72, unknown 43.6
2016 Female, age 72, unknown 32.5
Inferior colliculus
nTPM: 66.3
2097 Female, age 72, unknown 75.9
1890 Male, age 53, unknown 69.6
1848 Female, age 42, unknown 59.8
2849 Male, age 72, unknown 59.8
Median raphe nucleus
nTPM: 54.1
2220 Male, age 76, midline 54.1
Periaquaductal grey, anterior
nTPM: 75.4
2502 Female, age 75, unknown 98.7
1795 Male, age 51, unknown 77.6
1947 Male, age 18, unknown 49.9
Periaquaductal grey, dorsal
nTPM: 51.6
1831 Male, age 72, unknown 64.1
2464 Female, age 72, unknown 57.1
1840 Male, age 53, unknown 50.3
2850 Male, age 76, both hemispheres 34.9
Periaquaductal grey, lateral
nTPM: 46.5
2053 Male, age 18, unknown 56.2
2272 Male, age 74, both hemispheres 43.8
2140 Male, age 76, both hemispheres 39.6
Pretectal area
nTPM: 82.5
1816 Male, age 51, unknown 130.3
1944 Female, age 72, unknown 115.9
2007 Male, age 72, unknown 111.0
1817 Female, age 42, unknown 101.0
1815 Male, age 53, unknown 91.0
2667 Female, age 75, unknown 88.3
2316 Male, age 76, right hemisphere 63.6
2407 Male, age 75, both hemispheres 61.6
2224 Female, age 72, unknown 50.6
2825 Male, age 18, unknown 48.0
2273 Male, age 74, both hemispheres 46.6
Red nucleus
nTPM: 58.3
2785 Male, age 18, unknown 91.1
2588 Male, age 74, left hemisphere 72.4
2584 Male, age 75, left hemisphere 68.6
2823 Male, age 76, right hemisphere 64.4
1904 Male, age 53, unknown 59.0
2503 Female, age 72, unknown 58.7
2227 Male, age 72, unknown 49.9
1865 Male, age 51, unknown 49.2
2769 Male, age 72, unknown 48.7
2725 Female, age 75, unknown 47.4
1821 Female, age 72, unknown 46.2
1954 Female, age 42, unknown 43.7
Substantia nigra
nTPM: 58.0
2665 Male, age 74, both hemispheres 84.7
1889 Female, age 72, unknown 78.5
1916 Female, age 42, unknown 71.3
2583 Male, age 75, right hemisphere 58.4
1851 Male, age 51, unknown 57.3
1941 Male, age 53, unknown 52.7
2590 Female, age 75, unknown 51.8
2241 Male, age 72, unknown 45.0
2699 Male, age 18, unknown 44.3
2409 Female, age 72, unknown 36.4
Superior colliculus
nTPM: 73.8
2087 Female, age 72, unknown 104.3
2261 Male, age 18, unknown 90.3
2664 Male, age 75, both hemispheres 89.3
1796 Male, age 53, unknown 86.9
1913 Female, age 42, unknown 63.5
1895 Male, age 76, right hemisphere 62.3
1995 Male, age 72, unknown 61.4
2668 Female, age 75, unknown 60.6
2587 Male, age 74, left hemisphere 59.6
1839 Male, age 51, unknown 59.4
Ventral tegmental area
nTPM: 63.9
2223 Female, age 72, unknown 86.2
2218 Male, age 76, both hemispheres 75.8
2410 Female, age 72, unknown 64.5
1942 Male, age 51, unknown 57.1
1915 Female, age 42, unknown 53.6
2021 Male, age 53, unknown 46.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.7
Samples: 183

Max nTPM: 96.9
Min nTPM: 4.3
Std nTPM: 10.2
Median nTPM: 21.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 96.9
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 46.3
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 43.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 40.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 40.5
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 40.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 39.8
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 36.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 36.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 36.5
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 36.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 22.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.2
FF:10158-103A5 76 years, female 22.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 60.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.4
Samples: 4

Max nTPM: 41.0
Min nTPM: 22.9
Sample A Female 41.0
Sample B Female 22.9
Sample C Male 36.9
Sample D Male 24.6
Midbrain
nTPM: 60.5
Samples: 4

Max nTPM: 121.7
Min nTPM: 25.0
Sample A Female 38.0
Sample B Female 25.0
Sample C Male 121.7
Sample D Male 57.4
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 25.5
Min nTPM: 21.1
Sample B Female 22.7
Sample C Male 25.5
Sample D Male 21.1
Superior colliculi
nTPM: 49.4
Samples: 4

Max nTPM: 71.9
Min nTPM: 23.2
Sample A Female 50.5
Sample B Female 23.2
Sample C Male 71.9
Sample D Male 51.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 27.5
Min nTPM: 23.4
Sample A Male 27.5
Sample B Male 23.4
Sample C Female 26.6
Sample D Female 26.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.1
77620459 Antisense, RP_070129_03_D06, Mouse strain C57BL/6J (56 days, male) 4.1

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