MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.2 nTPM
HPA Brain:204.8 nTPM
GTEx:49.2 nTPM
FANTOM5:215.2 Scaled Tags Per Million
Pig:171.7 nTPM
Mouse:40.5 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 204.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 171.2
2586 Male, age 75, left hemisphere 301.3
2666 Male, age 74, left hemisphere 237.4
2828 Female, age 72, unknown 212.4
1827 Male, age 72, unknown 165.8
2219 Male, age 76, both hemispheres 158.5
1833 Male, age 53, unknown 136.4
1870 Female, age 42, unknown 135.4
1830 Male, age 51, unknown 131.2
2019 Male, age 18, unknown 122.7
2411 Female, age 72, unknown 111.1
Dorsal raphe nucleus
nTPM: 168.5
2016 Female, age 72, unknown 200.5
2047 Male, age 72, unknown 192.7
1828 Male, age 53, unknown 161.4
2750 Male, age 76, both hemispheres 146.2
2298 Female, age 72, unknown 141.7
Inferior colliculus
nTPM: 149.3
2849 Male, age 72, unknown 157.5
1890 Male, age 53, unknown 157.2
1848 Female, age 42, unknown 145.1
2097 Female, age 72, unknown 137.3
Median raphe nucleus
nTPM: 153.4
2220 Male, age 76, midline 153.4
Periaquaductal grey, anterior
nTPM: 204.8
1947 Male, age 18, unknown 223.9
1795 Male, age 51, unknown 198.5
2502 Female, age 75, unknown 192.1
Periaquaductal grey, dorsal
nTPM: 169.0
1840 Male, age 53, unknown 205.0
1831 Male, age 72, unknown 163.5
2850 Male, age 76, both hemispheres 158.7
2464 Female, age 72, unknown 148.9
Periaquaductal grey, lateral
nTPM: 174.7
2140 Male, age 76, both hemispheres 190.5
2053 Male, age 18, unknown 185.7
2272 Male, age 74, both hemispheres 147.8
Pretectal area
nTPM: 181.3
2407 Male, age 75, both hemispheres 226.5
1816 Male, age 51, unknown 224.5
1944 Female, age 72, unknown 213.1
1815 Male, age 53, unknown 187.1
2273 Male, age 74, both hemispheres 172.8
2007 Male, age 72, unknown 170.2
2825 Male, age 18, unknown 166.8
1817 Female, age 42, unknown 165.2
2316 Male, age 76, right hemisphere 156.8
2667 Female, age 75, unknown 156.5
2224 Female, age 72, unknown 154.3
Red nucleus
nTPM: 149.3
2584 Male, age 75, left hemisphere 197.0
2725 Female, age 75, unknown 179.4
2588 Male, age 74, left hemisphere 165.1
2503 Female, age 72, unknown 164.9
2227 Male, age 72, unknown 147.6
2785 Male, age 18, unknown 143.7
2769 Male, age 72, unknown 141.5
1904 Male, age 53, unknown 140.5
1954 Female, age 42, unknown 135.1
1865 Male, age 51, unknown 131.1
1821 Female, age 72, unknown 123.5
2823 Male, age 76, right hemisphere 121.7
Substantia nigra
nTPM: 184.5
1916 Female, age 42, unknown 223.3
2583 Male, age 75, right hemisphere 214.0
2699 Male, age 18, unknown 202.7
2590 Female, age 75, unknown 200.4
1851 Male, age 51, unknown 197.5
2665 Male, age 74, both hemispheres 175.8
1889 Female, age 72, unknown 165.8
2409 Female, age 72, unknown 160.0
2241 Male, age 72, unknown 153.3
1941 Male, age 53, unknown 152.4
Superior colliculus
nTPM: 182.6
2664 Male, age 75, both hemispheres 271.9
2261 Male, age 18, unknown 202.8
1995 Male, age 72, unknown 194.9
1796 Male, age 53, unknown 187.7
2087 Female, age 72, unknown 175.0
1913 Female, age 42, unknown 172.9
2587 Male, age 74, left hemisphere 170.8
2668 Female, age 75, unknown 164.4
1839 Male, age 51, unknown 160.1
1895 Male, age 76, right hemisphere 125.6
Ventral tegmental area
nTPM: 164.7
1942 Male, age 51, unknown 194.7
1915 Female, age 42, unknown 182.6
2021 Male, age 53, unknown 180.8
2218 Male, age 76, both hemispheres 156.5
2410 Female, age 72, unknown 140.4
2223 Female, age 72, unknown 133.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.2
Samples: 183

Max nTPM: 95.9
Min nTPM: 7.8
Std nTPM: 15.1
Median nTPM: 49.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 95.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 95.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 85.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 84.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 83.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 80.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 79.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 78.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 77.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 76.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 75.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 215.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 215.2
FF:10158-103A5 76 years, female 215.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 171.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 138.5
Samples: 4

Max nTPM: 175.8
Min nTPM: 98.7
Sample A Female 145.8
Sample B Female 98.7
Sample C Male 175.8
Sample D Male 133.5
Midbrain
nTPM: 171.7
Samples: 4

Max nTPM: 217.1
Min nTPM: 107.2
Sample A Female 198.2
Sample B Female 107.2
Sample C Male 217.1
Sample D Male 164.3
Periaqueductal gray
nTPM: 105.6
Samples: 3

Max nTPM: 115.1
Min nTPM: 97.2
Sample B Female 104.5
Sample C Male 115.1
Sample D Male 97.2
Superior colliculi
nTPM: 138.5
Samples: 4

Max nTPM: 186.3
Min nTPM: 82.3
Sample A Female 135.5
Sample B Female 82.3
Sample C Male 186.3
Sample D Male 149.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 40.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.5
Samples: 4

Max nTPM: 42.5
Min nTPM: 38.0
Sample A Male 40.8
Sample B Male 38.0
Sample C Female 42.5
Sample D Female 40.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
69540411 Antisense, RP_050426_01_G02, Mouse strain C57BL/6J (56 days, male) 0.9

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