MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.7 nTPM
HPA Brain:105.2 nTPM
GTEx:38.7 nTPM
FANTOM5:299.4 Scaled Tags Per Million
Pig:73.7 nTPM
Mouse:71.1 nTPM
Allen mouse:7.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 105.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.1
1870 Female, age 42, unknown 91.2
2411 Female, age 72, unknown 89.8
1833 Male, age 53, unknown 88.6
1830 Male, age 51, unknown 84.2
2219 Male, age 76, both hemispheres 70.3
1827 Male, age 72, unknown 56.7
2828 Female, age 72, unknown 56.7
2019 Male, age 18, unknown 46.0
2666 Male, age 74, left hemisphere 45.1
2586 Male, age 75, left hemisphere 42.0
Dorsal raphe nucleus
nTPM: 86.8
2750 Male, age 76, both hemispheres 127.6
2047 Male, age 72, unknown 85.5
2298 Female, age 72, unknown 79.2
2016 Female, age 72, unknown 73.7
1828 Male, age 53, unknown 67.7
Inferior colliculus
nTPM: 63.8
2849 Male, age 72, unknown 80.2
1848 Female, age 42, unknown 71.7
2097 Female, age 72, unknown 55.8
1890 Male, age 53, unknown 47.5
Median raphe nucleus
nTPM: 105.2
2220 Male, age 76, midline 105.2
Periaquaductal grey, anterior
nTPM: 55.5
1947 Male, age 18, unknown 75.9
2502 Female, age 75, unknown 47.7
1795 Male, age 51, unknown 43.0
Periaquaductal grey, dorsal
nTPM: 58.8
2464 Female, age 72, unknown 63.8
1840 Male, age 53, unknown 61.4
2850 Male, age 76, both hemispheres 58.6
1831 Male, age 72, unknown 51.5
Periaquaductal grey, lateral
nTPM: 52.1
2053 Male, age 18, unknown 56.5
2140 Male, age 76, both hemispheres 50.0
2272 Male, age 74, both hemispheres 49.9
Pretectal area
nTPM: 49.2
2224 Female, age 72, unknown 70.1
2825 Male, age 18, unknown 69.3
2316 Male, age 76, right hemisphere 67.6
2667 Female, age 75, unknown 59.1
2273 Male, age 74, both hemispheres 53.1
2407 Male, age 75, both hemispheres 48.0
1815 Male, age 53, unknown 46.7
1817 Female, age 42, unknown 40.7
2007 Male, age 72, unknown 30.1
1944 Female, age 72, unknown 29.9
1816 Male, age 51, unknown 26.2
Red nucleus
nTPM: 79.4
1821 Female, age 72, unknown 124.0
1865 Male, age 51, unknown 95.3
1904 Male, age 53, unknown 91.6
1954 Female, age 42, unknown 90.4
2769 Male, age 72, unknown 86.9
2227 Male, age 72, unknown 85.3
2823 Male, age 76, right hemisphere 81.3
2503 Female, age 72, unknown 71.7
2725 Female, age 75, unknown 70.6
2588 Male, age 74, left hemisphere 57.3
2584 Male, age 75, left hemisphere 49.5
2785 Male, age 18, unknown 49.5
Substantia nigra
nTPM: 65.5
2699 Male, age 18, unknown 88.4
2241 Male, age 72, unknown 74.5
1851 Male, age 51, unknown 73.7
1941 Male, age 53, unknown 73.2
2409 Female, age 72, unknown 68.0
1916 Female, age 42, unknown 65.7
1889 Female, age 72, unknown 60.8
2590 Female, age 75, unknown 54.7
2583 Male, age 75, right hemisphere 54.6
2665 Male, age 74, both hemispheres 41.8
Superior colliculus
nTPM: 57.9
1895 Male, age 76, right hemisphere 92.7
1839 Male, age 51, unknown 75.2
1913 Female, age 42, unknown 70.2
2587 Male, age 74, left hemisphere 66.9
2668 Female, age 75, unknown 62.5
1995 Male, age 72, unknown 57.7
1796 Male, age 53, unknown 48.5
2261 Male, age 18, unknown 38.0
2087 Female, age 72, unknown 34.0
2664 Male, age 75, both hemispheres 33.5
Ventral tegmental area
nTPM: 81.1
2218 Male, age 76, both hemispheres 95.7
2410 Female, age 72, unknown 85.5
2223 Female, age 72, unknown 82.0
1915 Female, age 42, unknown 77.3
2021 Male, age 53, unknown 76.4
1942 Male, age 51, unknown 69.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.7
Samples: 183

Max nTPM: 119.8
Min nTPM: 13.5
Std nTPM: 15.9
Median nTPM: 35.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 119.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 100.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 91.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 91.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 90.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 82.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 69.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 68.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 64.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 64.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 64.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 299.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 299.4
FF:10158-103A5 76 years, female 299.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 73.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 56.2
Samples: 4

Max nTPM: 70.3
Min nTPM: 46.0
Sample A Female 61.7
Sample B Female 70.3
Sample C Male 46.6
Sample D Male 46.0
Midbrain
nTPM: 48.4
Samples: 4

Max nTPM: 63.0
Min nTPM: 29.1
Sample A Female 39.6
Sample B Female 63.0
Sample C Male 29.1
Sample D Male 61.9
Periaqueductal gray
nTPM: 55.4
Samples: 3

Max nTPM: 60.1
Min nTPM: 52.1
Sample B Female 53.9
Sample C Male 60.1
Sample D Male 52.1
Superior colliculi
nTPM: 73.8
Samples: 4

Max nTPM: 126.2
Min nTPM: 28.7
Sample A Female 84.2
Sample B Female 126.2
Sample C Male 28.7
Sample D Male 55.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 71.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.1
Samples: 4

Max nTPM: 76.4
Min nTPM: 63.7
Sample A Male 63.7
Sample B Male 74.5
Sample C Female 76.4
Sample D Female 69.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
130155 Antisense, RP_040407_01_F11, Mouse strain C57BL/6J (56 days, male) 7.7
70928271 Antisense, RP_050725_02_C06, Mouse strain C57BL/6J (56 days, male) 6.4

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