MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.5 nTPM
HPA Brain:235.5 nTPM
GTEx:35.5 nTPM
FANTOM5:137.8 Scaled Tags Per Million
Pig:71.2 nTPM
Mouse:228.8 nTPM
Allen mouse:6.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 235.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 195.8
2586 Male, age 75, left hemisphere 302.3
2828 Female, age 72, unknown 252.4
1833 Male, age 53, unknown 212.4
1830 Male, age 51, unknown 189.7
1870 Female, age 42, unknown 183.7
1827 Male, age 72, unknown 179.8
2019 Male, age 18, unknown 170.9
2411 Female, age 72, unknown 170.2
2219 Male, age 76, both hemispheres 151.8
2666 Male, age 74, left hemisphere 144.4
Dorsal raphe nucleus
nTPM: 215.4
2016 Female, age 72, unknown 245.8
1828 Male, age 53, unknown 229.6
2047 Male, age 72, unknown 215.1
2298 Female, age 72, unknown 214.1
2750 Male, age 76, both hemispheres 172.5
Inferior colliculus
nTPM: 213.3
1848 Female, age 42, unknown 237.2
2849 Male, age 72, unknown 222.1
1890 Male, age 53, unknown 201.9
2097 Female, age 72, unknown 192.1
Median raphe nucleus
nTPM: 134.3
2220 Male, age 76, midline 134.3
Periaquaductal grey, anterior
nTPM: 192.8
2502 Female, age 75, unknown 212.4
1795 Male, age 51, unknown 188.1
1947 Male, age 18, unknown 177.7
Periaquaductal grey, dorsal
nTPM: 194.2
1840 Male, age 53, unknown 222.3
2850 Male, age 76, both hemispheres 199.3
2464 Female, age 72, unknown 193.5
1831 Male, age 72, unknown 161.9
Periaquaductal grey, lateral
nTPM: 201.2
2140 Male, age 76, both hemispheres 217.3
2053 Male, age 18, unknown 211.5
2272 Male, age 74, both hemispheres 174.8
Pretectal area
nTPM: 196.1
2667 Female, age 75, unknown 249.4
1817 Female, age 42, unknown 218.9
2273 Male, age 74, both hemispheres 217.4
2825 Male, age 18, unknown 208.7
1944 Female, age 72, unknown 202.1
1815 Male, age 53, unknown 197.1
2316 Male, age 76, right hemisphere 186.0
2224 Female, age 72, unknown 182.0
1816 Male, age 51, unknown 181.1
2007 Male, age 72, unknown 165.0
2407 Male, age 75, both hemispheres 149.5
Red nucleus
nTPM: 235.5
2769 Male, age 72, unknown 290.2
2227 Male, age 72, unknown 282.7
1904 Male, age 53, unknown 264.4
1954 Female, age 42, unknown 262.6
2823 Male, age 76, right hemisphere 257.3
1821 Female, age 72, unknown 244.8
1865 Male, age 51, unknown 242.4
2503 Female, age 72, unknown 241.0
2588 Male, age 74, left hemisphere 224.4
2725 Female, age 75, unknown 193.3
2785 Male, age 18, unknown 177.2
2584 Male, age 75, left hemisphere 145.1
Substantia nigra
nTPM: 187.3
2699 Male, age 18, unknown 256.0
1916 Female, age 42, unknown 226.4
1889 Female, age 72, unknown 207.0
2583 Male, age 75, right hemisphere 196.2
1851 Male, age 51, unknown 190.9
2409 Female, age 72, unknown 187.8
2665 Male, age 74, both hemispheres 177.7
2590 Female, age 75, unknown 153.0
2241 Male, age 72, unknown 140.9
1941 Male, age 53, unknown 136.7
Superior colliculus
nTPM: 204.0
2664 Male, age 75, both hemispheres 250.3
1995 Male, age 72, unknown 244.6
2087 Female, age 72, unknown 205.4
2668 Female, age 75, unknown 205.4
2261 Male, age 18, unknown 202.5
1796 Male, age 53, unknown 202.1
1839 Male, age 51, unknown 198.8
1895 Male, age 76, right hemisphere 184.2
1913 Female, age 42, unknown 177.9
2587 Male, age 74, left hemisphere 168.9
Ventral tegmental area
nTPM: 173.8
2410 Female, age 72, unknown 197.8
1915 Female, age 42, unknown 188.7
1942 Male, age 51, unknown 179.1
2218 Male, age 76, both hemispheres 163.6
2223 Female, age 72, unknown 159.5
2021 Male, age 53, unknown 154.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 183

Max nTPM: 110.6
Min nTPM: 5.6
Std nTPM: 18.5
Median nTPM: 32.0
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 110.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 100.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 94.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 83.6
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 76.9
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 74.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 71.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 70.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 70.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 69.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 67.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 137.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 137.8
FF:10158-103A5 76 years, female 137.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 71.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.2
Samples: 4

Max nTPM: 82.6
Min nTPM: 50.9
Sample A Female 81.6
Sample B Female 50.9
Sample C Male 69.6
Sample D Male 82.6
Midbrain
nTPM: 70.9
Samples: 4

Max nTPM: 114.8
Min nTPM: 46.7
Sample A Female 114.8
Sample B Female 67.2
Sample C Male 54.7
Sample D Male 46.7
Periaqueductal gray
nTPM: 63.1
Samples: 3

Max nTPM: 69.7
Min nTPM: 54.4
Sample B Female 69.7
Sample C Male 65.3
Sample D Male 54.4
Superior colliculi
nTPM: 58.2
Samples: 4

Max nTPM: 76.5
Min nTPM: 29.1
Sample A Female 76.5
Sample B Female 29.1
Sample C Male 62.0
Sample D Male 65.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 228.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 228.8
Samples: 4

Max nTPM: 252.9
Min nTPM: 210.2
Sample A Male 252.9
Sample B Male 212.4
Sample C Female 210.2
Sample D Female 239.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
69257546 Antisense, RP_050331_02_G11, Mouse strain C57BL/6J (56 days, male) 6.7
74724670 Antisense, RP_060220_04_A11, Mouse strain C57BL/6J (56 days, male) 5.8

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