MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.3 nTPM
HPA Brain:110.1 nTPM
GTEx:49.3 nTPM
FANTOM5:174.0 Scaled Tags Per Million
Pig:15.1 nTPM
Mouse:0.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 110.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.3
1833 Male, age 53, unknown 110.9
1830 Male, age 51, unknown 103.7
2019 Male, age 18, unknown 101.1
2411 Female, age 72, unknown 99.7
1870 Female, age 42, unknown 98.8
2828 Female, age 72, unknown 82.3
1827 Male, age 72, unknown 63.2
2666 Male, age 74, left hemisphere 63.2
2219 Male, age 76, both hemispheres 62.0
2586 Male, age 75, left hemisphere 57.9
Dorsal raphe nucleus
nTPM: 70.7
2750 Male, age 76, both hemispheres 108.9
2016 Female, age 72, unknown 74.3
1828 Male, age 53, unknown 72.8
2047 Male, age 72, unknown 49.0
2298 Female, age 72, unknown 48.6
Inferior colliculus
nTPM: 63.6
2849 Male, age 72, unknown 69.2
1848 Female, age 42, unknown 65.6
1890 Male, age 53, unknown 64.5
2097 Female, age 72, unknown 55.3
Median raphe nucleus
nTPM: 59.8
2220 Male, age 76, midline 59.8
Periaquaductal grey, anterior
nTPM: 57.6
2502 Female, age 75, unknown 69.5
1947 Male, age 18, unknown 55.6
1795 Male, age 51, unknown 47.6
Periaquaductal grey, dorsal
nTPM: 54.4
2464 Female, age 72, unknown 68.3
2850 Male, age 76, both hemispheres 56.0
1831 Male, age 72, unknown 54.0
1840 Male, age 53, unknown 39.4
Periaquaductal grey, lateral
nTPM: 63.1
2272 Male, age 74, both hemispheres 71.2
2053 Male, age 18, unknown 61.7
2140 Male, age 76, both hemispheres 56.2
Pretectal area
nTPM: 65.4
1815 Male, age 53, unknown 84.2
2667 Female, age 75, unknown 79.1
2316 Male, age 76, right hemisphere 74.1
1817 Female, age 42, unknown 73.2
2273 Male, age 74, both hemispheres 69.5
2407 Male, age 75, both hemispheres 64.9
2825 Male, age 18, unknown 64.0
2007 Male, age 72, unknown 62.7
2224 Female, age 72, unknown 54.7
1944 Female, age 72, unknown 50.0
1816 Male, age 51, unknown 43.3
Red nucleus
nTPM: 110.1
1865 Male, age 51, unknown 132.5
1904 Male, age 53, unknown 131.3
2823 Male, age 76, right hemisphere 129.4
1821 Female, age 72, unknown 124.6
2227 Male, age 72, unknown 121.9
2769 Male, age 72, unknown 120.0
1954 Female, age 42, unknown 112.0
2785 Male, age 18, unknown 110.3
2503 Female, age 72, unknown 104.6
2588 Male, age 74, left hemisphere 88.5
2725 Female, age 75, unknown 74.2
2584 Male, age 75, left hemisphere 71.4
Substantia nigra
nTPM: 63.7
2409 Female, age 72, unknown 74.2
1889 Female, age 72, unknown 73.2
2699 Male, age 18, unknown 72.9
1851 Male, age 51, unknown 72.5
2583 Male, age 75, right hemisphere 67.0
2590 Female, age 75, unknown 62.1
1916 Female, age 42, unknown 55.5
2241 Male, age 72, unknown 55.5
2665 Male, age 74, both hemispheres 52.3
1941 Male, age 53, unknown 51.6
Superior colliculus
nTPM: 72.9
1995 Male, age 72, unknown 105.4
1913 Female, age 42, unknown 103.6
1895 Male, age 76, right hemisphere 85.0
2587 Male, age 74, left hemisphere 77.5
1839 Male, age 51, unknown 76.1
2668 Female, age 75, unknown 69.1
1796 Male, age 53, unknown 60.5
2087 Female, age 72, unknown 54.0
2261 Male, age 18, unknown 50.2
2664 Male, age 75, both hemispheres 47.4
Ventral tegmental area
nTPM: 70.9
2223 Female, age 72, unknown 91.5
2410 Female, age 72, unknown 88.4
1942 Male, age 51, unknown 63.6
2218 Male, age 76, both hemispheres 63.1
1915 Female, age 42, unknown 62.2
2021 Male, age 53, unknown 56.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.3
Samples: 183

Max nTPM: 123.5
Min nTPM: 13.8
Std nTPM: 21.2
Median nTPM: 44.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 123.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 122.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 117.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 117.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 107.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 103.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 102.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 102.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 96.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 94.9
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 94.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 174.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.0
FF:10158-103A5 76 years, female 174.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 15.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.7
Samples: 4

Max nTPM: 8.6
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 8.6
Sample C Male 6.1
Sample D Male 6.9
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 6.7
Min nTPM: 3.8
Sample A Female 3.8
Sample B Female 6.7
Sample C Male 5.7
Sample D Male 5.0
Periaqueductal gray
nTPM: 8.5
Samples: 3

Max nTPM: 9.0
Min nTPM: 8.1
Sample B Female 8.1
Sample C Male 9.0
Sample D Male 8.4
Superior colliculi
nTPM: 15.1
Samples: 4

Max nTPM: 40.3
Min nTPM: 5.2
Sample A Female 8.8
Sample B Female 40.3
Sample C Male 5.2
Sample D Male 6.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.1
Sample D Female 0.0

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