MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.2 nTPM
HPA Brain:46.0 nTPM
GTEx:66.2 nTPM
FANTOM5:45.8 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:96.9 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 46.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.4
2019 Male, age 18, unknown 49.7
2666 Male, age 74, left hemisphere 41.3
2219 Male, age 76, both hemispheres 37.4
1827 Male, age 72, unknown 36.4
2586 Male, age 75, left hemisphere 33.6
2411 Female, age 72, unknown 31.4
2828 Female, age 72, unknown 29.9
1833 Male, age 53, unknown 25.7
1870 Female, age 42, unknown 25.7
1830 Male, age 51, unknown 22.8
Dorsal raphe nucleus
nTPM: 31.5
2298 Female, age 72, unknown 37.0
1828 Male, age 53, unknown 36.8
2047 Male, age 72, unknown 32.1
2750 Male, age 76, both hemispheres 29.7
2016 Female, age 72, unknown 22.1
Inferior colliculus
nTPM: 29.2
2097 Female, age 72, unknown 36.0
1890 Male, age 53, unknown 31.3
1848 Female, age 42, unknown 25.8
2849 Male, age 72, unknown 23.8
Median raphe nucleus
nTPM: 40.0
2220 Male, age 76, midline 40.0
Periaquaductal grey, anterior
nTPM: 27.1
1795 Male, age 51, unknown 29.9
1947 Male, age 18, unknown 26.8
2502 Female, age 75, unknown 24.4
Periaquaductal grey, dorsal
nTPM: 23.5
1840 Male, age 53, unknown 26.5
1831 Male, age 72, unknown 23.7
2850 Male, age 76, both hemispheres 23.1
2464 Female, age 72, unknown 20.8
Periaquaductal grey, lateral
nTPM: 18.9
2272 Male, age 74, both hemispheres 20.0
2053 Male, age 18, unknown 18.6
2140 Male, age 76, both hemispheres 18.1
Pretectal area
nTPM: 38.5
1817 Female, age 42, unknown 65.3
2007 Male, age 72, unknown 62.4
1944 Female, age 72, unknown 57.9
1816 Male, age 51, unknown 52.7
1815 Male, age 53, unknown 49.9
2667 Female, age 75, unknown 27.8
2224 Female, age 72, unknown 27.6
2407 Male, age 75, both hemispheres 24.5
2825 Male, age 18, unknown 20.2
2316 Male, age 76, right hemisphere 17.8
2273 Male, age 74, both hemispheres 17.1
Red nucleus
nTPM: 29.6
2785 Male, age 18, unknown 44.4
1821 Female, age 72, unknown 36.3
2725 Female, age 75, unknown 35.0
2584 Male, age 75, left hemisphere 32.1
1954 Female, age 42, unknown 30.6
1865 Male, age 51, unknown 27.4
2503 Female, age 72, unknown 26.9
2769 Male, age 72, unknown 25.5
2588 Male, age 74, left hemisphere 24.9
2227 Male, age 72, unknown 24.8
1904 Male, age 53, unknown 24.6
2823 Male, age 76, right hemisphere 22.2
Substantia nigra
nTPM: 46.0
1916 Female, age 42, unknown 71.5
2665 Male, age 74, both hemispheres 61.1
1889 Female, age 72, unknown 55.8
1851 Male, age 51, unknown 51.8
2241 Male, age 72, unknown 44.5
1941 Male, age 53, unknown 41.5
2409 Female, age 72, unknown 40.3
2699 Male, age 18, unknown 34.7
2583 Male, age 75, right hemisphere 32.2
2590 Female, age 75, unknown 26.6
Superior colliculus
nTPM: 29.3
2668 Female, age 75, unknown 51.7
2087 Female, age 72, unknown 43.9
1796 Male, age 53, unknown 33.1
1895 Male, age 76, right hemisphere 29.2
2261 Male, age 18, unknown 25.9
2587 Male, age 74, left hemisphere 24.9
1913 Female, age 42, unknown 24.1
1839 Male, age 51, unknown 23.5
1995 Male, age 72, unknown 20.6
2664 Male, age 75, both hemispheres 16.1
Ventral tegmental area
nTPM: 36.1
2410 Female, age 72, unknown 53.5
2218 Male, age 76, both hemispheres 44.3
1915 Female, age 42, unknown 41.8
1942 Male, age 51, unknown 30.4
2223 Female, age 72, unknown 25.5
2021 Male, age 53, unknown 21.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 66.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.2
Samples: 183

Max nTPM: 160.3
Min nTPM: 29.1
Std nTPM: 29.7
Median nTPM: 56.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 160.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 157.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 154.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 145.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 145.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 134.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 131.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 129.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 124.0
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 122.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 121.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 45.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.8
FF:10158-103A5 76 years, female 45.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.9
Samples: 4

Max nTPM: 27.3
Min nTPM: 13.7
Sample A Female 26.4
Sample B Female 16.1
Sample C Male 27.3
Sample D Male 13.7
Midbrain
nTPM: 21.4
Samples: 4

Max nTPM: 29.1
Min nTPM: 17.7
Sample A Female 17.7
Sample B Female 17.9
Sample C Male 29.1
Sample D Male 20.8
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 20.6
Min nTPM: 13.1
Sample B Female 15.8
Sample C Male 20.6
Sample D Male 13.1
Superior colliculi
nTPM: 23.3
Samples: 4

Max nTPM: 27.9
Min nTPM: 20.3
Sample A Female 24.2
Sample B Female 20.3
Sample C Male 27.9
Sample D Male 20.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 96.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.9
Samples: 4

Max nTPM: 97.9
Min nTPM: 95.3
Sample A Male 95.3
Sample B Male 97.8
Sample C Female 97.9
Sample D Female 96.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
554 Antisense, RP_040304_01_03, Mouse strain C57BL/6J (56 days, male) 0.1
555 Antisense, RP_040304_01_03, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo