MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:31.4 nTPM
GTEx:7.7 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:13.0 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 31.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.5
1830 Male, age 51, unknown 33.7
1833 Male, age 53, unknown 31.2
2019 Male, age 18, unknown 31.0
2411 Female, age 72, unknown 29.6
1870 Female, age 42, unknown 27.8
2219 Male, age 76, both hemispheres 24.2
2828 Female, age 72, unknown 22.9
2666 Male, age 74, left hemisphere 21.4
1827 Male, age 72, unknown 18.1
2586 Male, age 75, left hemisphere 15.1
Dorsal raphe nucleus
nTPM: 18.6
2750 Male, age 76, both hemispheres 30.2
1828 Male, age 53, unknown 18.8
2016 Female, age 72, unknown 18.4
2047 Male, age 72, unknown 13.7
2298 Female, age 72, unknown 12.0
Inferior colliculus
nTPM: 18.2
1890 Male, age 53, unknown 19.6
2849 Male, age 72, unknown 18.8
1848 Female, age 42, unknown 18.1
2097 Female, age 72, unknown 16.5
Median raphe nucleus
nTPM: 17.8
2220 Male, age 76, midline 17.8
Periaquaductal grey, anterior
nTPM: 14.2
1947 Male, age 18, unknown 16.3
2502 Female, age 75, unknown 14.2
1795 Male, age 51, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 13.5
2464 Female, age 72, unknown 19.7
1831 Male, age 72, unknown 13.6
2850 Male, age 76, both hemispheres 12.2
1840 Male, age 53, unknown 8.4
Periaquaductal grey, lateral
nTPM: 14.9
2272 Male, age 74, both hemispheres 17.9
2053 Male, age 18, unknown 15.5
2140 Male, age 76, both hemispheres 11.3
Pretectal area
nTPM: 17.0
2316 Male, age 76, right hemisphere 25.6
1815 Male, age 53, unknown 23.3
2407 Male, age 75, both hemispheres 19.4
1817 Female, age 42, unknown 18.2
2007 Male, age 72, unknown 17.0
2667 Female, age 75, unknown 16.4
2825 Male, age 18, unknown 16.2
2273 Male, age 74, both hemispheres 14.7
2224 Female, age 72, unknown 13.8
1944 Female, age 72, unknown 11.7
1816 Male, age 51, unknown 10.7
Red nucleus
nTPM: 31.4
2823 Male, age 76, right hemisphere 40.5
1904 Male, age 53, unknown 38.4
1865 Male, age 51, unknown 36.2
1821 Female, age 72, unknown 35.2
2227 Male, age 72, unknown 32.7
2785 Male, age 18, unknown 32.3
2769 Male, age 72, unknown 32.1
1954 Female, age 42, unknown 31.4
2503 Female, age 72, unknown 28.8
2588 Male, age 74, left hemisphere 26.1
2725 Female, age 75, unknown 23.1
2584 Male, age 75, left hemisphere 19.8
Substantia nigra
nTPM: 19.5
2409 Female, age 72, unknown 27.6
2590 Female, age 75, unknown 23.2
2583 Male, age 75, right hemisphere 21.6
1851 Male, age 51, unknown 20.9
1889 Female, age 72, unknown 20.8
2241 Male, age 72, unknown 18.2
2699 Male, age 18, unknown 17.9
1941 Male, age 53, unknown 16.8
1916 Female, age 42, unknown 15.0
2665 Male, age 74, both hemispheres 13.4
Superior colliculus
nTPM: 21.0
1913 Female, age 42, unknown 31.3
1995 Male, age 72, unknown 29.9
1895 Male, age 76, right hemisphere 26.1
2587 Male, age 74, left hemisphere 22.8
2668 Female, age 75, unknown 22.0
1839 Male, age 51, unknown 21.9
1796 Male, age 53, unknown 15.2
2087 Female, age 72, unknown 14.9
2261 Male, age 18, unknown 13.5
2664 Male, age 75, both hemispheres 11.8
Ventral tegmental area
nTPM: 20.4
2410 Female, age 72, unknown 26.9
2223 Female, age 72, unknown 23.9
1942 Male, age 51, unknown 18.5
2218 Male, age 76, both hemispheres 18.4
2021 Male, age 53, unknown 17.6
1915 Female, age 42, unknown 16.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 183

Max nTPM: 26.9
Min nTPM: 1.5
Std nTPM: 4.0
Median nTPM: 6.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 26.9
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 21.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 20.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 20.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 18.5
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 18.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 17.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 16.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 16.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.0
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 15.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.6
Samples: 4

Max nTPM: 69.8
Min nTPM: 31.7
Sample A Female 34.5
Sample B Female 34.3
Sample C Male 31.7
Sample D Male 69.8
Midbrain
nTPM: 44.0
Samples: 4

Max nTPM: 76.9
Min nTPM: 23.0
Sample A Female 76.9
Sample B Female 51.1
Sample C Male 23.0
Sample D Male 25.1
Periaqueductal gray
nTPM: 31.1
Samples: 3

Max nTPM: 44.4
Min nTPM: 20.7
Sample B Female 44.4
Sample C Male 20.7
Sample D Male 28.2
Superior colliculi
nTPM: 30.8
Samples: 4

Max nTPM: 37.3
Min nTPM: 20.1
Sample A Female 31.5
Sample B Female 20.1
Sample C Male 34.4
Sample D Male 37.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 13.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 13.6
Min nTPM: 12.5
Sample A Male 12.7
Sample B Male 12.5
Sample C Female 13.6
Sample D Female 13.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71809073 Antisense, RP_051005_01_E06, Mouse strain C57BL/6J (56 days, male) 0.1

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