MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:94.6 nTPM
HPA Brain:62.2 nTPM
GTEx:94.6 nTPM
FANTOM5:218.5 Scaled Tags Per Million
Pig:65.4 nTPM
Mouse:72.0 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.6
2019 Male, age 18, unknown 62.5
1870 Female, age 42, unknown 61.9
2586 Male, age 75, left hemisphere 58.2
2411 Female, age 72, unknown 56.9
1833 Male, age 53, unknown 56.0
2828 Female, age 72, unknown 55.7
1827 Male, age 72, unknown 55.5
1830 Male, age 51, unknown 55.0
2666 Male, age 74, left hemisphere 53.6
2219 Male, age 76, both hemispheres 51.0
Dorsal raphe nucleus
nTPM: 61.6
2298 Female, age 72, unknown 64.6
2750 Male, age 76, both hemispheres 62.1
1828 Male, age 53, unknown 61.0
2047 Male, age 72, unknown 60.8
2016 Female, age 72, unknown 59.6
Inferior colliculus
nTPM: 56.7
1890 Male, age 53, unknown 64.3
2097 Female, age 72, unknown 60.5
1848 Female, age 42, unknown 54.3
2849 Male, age 72, unknown 47.8
Median raphe nucleus
nTPM: 56.3
2220 Male, age 76, midline 56.3
Periaquaductal grey, anterior
nTPM: 55.0
1947 Male, age 18, unknown 62.7
2502 Female, age 75, unknown 51.8
1795 Male, age 51, unknown 50.5
Periaquaductal grey, dorsal
nTPM: 49.7
2464 Female, age 72, unknown 52.2
1831 Male, age 72, unknown 50.2
2850 Male, age 76, both hemispheres 50.1
1840 Male, age 53, unknown 46.4
Periaquaductal grey, lateral
nTPM: 49.8
2272 Male, age 74, both hemispheres 54.9
2053 Male, age 18, unknown 51.5
2140 Male, age 76, both hemispheres 43.0
Pretectal area
nTPM: 56.9
2007 Male, age 72, unknown 64.4
2667 Female, age 75, unknown 61.4
1944 Female, age 72, unknown 59.8
1817 Female, age 42, unknown 58.2
1816 Male, age 51, unknown 57.3
2407 Male, age 75, both hemispheres 57.1
2273 Male, age 74, both hemispheres 56.8
1815 Male, age 53, unknown 56.7
2224 Female, age 72, unknown 55.3
2825 Male, age 18, unknown 50.8
2316 Male, age 76, right hemisphere 47.9
Red nucleus
nTPM: 62.2
1821 Female, age 72, unknown 72.3
1904 Male, age 53, unknown 66.6
1954 Female, age 42, unknown 65.6
1865 Male, age 51, unknown 64.8
2823 Male, age 76, right hemisphere 63.9
2227 Male, age 72, unknown 62.7
2503 Female, age 72, unknown 62.4
2769 Male, age 72, unknown 61.8
2785 Male, age 18, unknown 60.5
2725 Female, age 75, unknown 58.6
2584 Male, age 75, left hemisphere 53.6
2588 Male, age 74, left hemisphere 53.4
Substantia nigra
nTPM: 61.2
1851 Male, age 51, unknown 68.0
2241 Male, age 72, unknown 66.3
1916 Female, age 42, unknown 63.8
1941 Male, age 53, unknown 63.4
1889 Female, age 72, unknown 63.2
2409 Female, age 72, unknown 61.8
2583 Male, age 75, right hemisphere 59.9
2590 Female, age 75, unknown 57.0
2699 Male, age 18, unknown 56.2
2665 Male, age 74, both hemispheres 52.3
Superior colliculus
nTPM: 56.2
2668 Female, age 75, unknown 62.0
1913 Female, age 42, unknown 59.2
2587 Male, age 74, left hemisphere 58.9
1895 Male, age 76, right hemisphere 58.5
2664 Male, age 75, both hemispheres 57.2
2087 Female, age 72, unknown 56.3
1995 Male, age 72, unknown 54.3
2261 Male, age 18, unknown 52.9
1839 Male, age 51, unknown 52.6
1796 Male, age 53, unknown 50.2
Ventral tegmental area
nTPM: 56.9
1915 Female, age 42, unknown 58.9
2223 Female, age 72, unknown 57.6
1942 Male, age 51, unknown 57.5
2218 Male, age 76, both hemispheres 56.6
2410 Female, age 72, unknown 56.3
2021 Male, age 53, unknown 54.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 94.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.6
Samples: 183

Max nTPM: 167.3
Min nTPM: 23.5
Std nTPM: 20.6
Median nTPM: 93.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 167.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 156.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 149.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 144.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 141.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 140.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 137.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 134.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 131.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 128.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 127.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 218.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 218.5
FF:10158-103A5 76 years, female 218.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 65.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.3
Samples: 4

Max nTPM: 67.7
Min nTPM: 37.8
Sample A Female 67.7
Sample B Female 37.8
Sample C Male 44.0
Sample D Male 59.8
Midbrain
nTPM: 60.4
Samples: 4

Max nTPM: 78.0
Min nTPM: 51.6
Sample A Female 78.0
Sample B Female 53.6
Sample C Male 51.6
Sample D Male 58.2
Periaqueductal gray
nTPM: 47.6
Samples: 3

Max nTPM: 50.6
Min nTPM: 45.4
Sample B Female 50.6
Sample C Male 45.4
Sample D Male 46.7
Superior colliculi
nTPM: 65.4
Samples: 4

Max nTPM: 84.6
Min nTPM: 38.8
Sample A Female 77.8
Sample B Female 38.8
Sample C Male 84.6
Sample D Male 60.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 72.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.0
Samples: 4

Max nTPM: 75.6
Min nTPM: 68.9
Sample A Male 75.6
Sample B Male 71.3
Sample C Female 68.9
Sample D Female 72.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
70303534 Antisense, RP_050609_01_F12, Mouse strain C57BL/6J (56 days, male) 1.3
73930820 Antisense, RP_051214_04_C04, Mouse strain C57BL/6J (56 days, male) 0.6

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