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  • ACYP2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:104.3 nTPM
HPA Brain:67.0 nTPM
GTEx:104.3 nTPM
FANTOM5:198.1 Scaled Tags Per Million
Pig:80.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

67.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 67.0
1981 Female, age 72, midline 79.1
2565 Male, age 75, midline 66.3
2048 Male, age 55, midline 66.0
2194 Female, age 79, both hemispheres 62.9
2816 Male, age 47, midline 60.8
Cervical spinal cord, dorsal horn
nTPM: 64.6
2173 Female, age 72, unknown 89.1
2296 Male, age 66, both hemispheres 76.7
2069 Male, age 47, both hemispheres 62.9
1877 Male, age 55, unknown 57.4
2297 Male, age 75, both hemispheres 54.0
2721 Male, age 90, both hemispheres 47.6
Cervical spinal cord, ventral horn
nTPM: 62.7
2098 Female, age 72, unknown 70.2
2809 Male, age 90, both hemispheres 65.4
2295 Male, age 66, both hemispheres 64.0
2480 Male, age 75, both hemispheres 62.7
2820 Female, age 79, both hemispheres 56.9
2068 Male, age 55, unknown 56.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 104.3
Samples: 204

Max nTPM: 188.4
Min nTPM: 42.3
Std nTPM: 26.9
Median nTPM: 104.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 188.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 170.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 169.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 164.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 162.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 160.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 160.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 157.2
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 156.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 154.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 152.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 151.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 150.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 147.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 147.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 146.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 144.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 143.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 140.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 138.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 138.5
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 137.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 137.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 137.2
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 136.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 134.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 134.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 133.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 131.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 131.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 130.0
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 128.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 128.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 127.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 127.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 127.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 126.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 125.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 125.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 124.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 124.3
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 124.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 124.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 123.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 123.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 122.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 122.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 122.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 121.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 120.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 120.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 120.4
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 120.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 119.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 119.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 119.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 119.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 119.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 118.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 118.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 116.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 116.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 116.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 116.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 115.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 115.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 115.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 115.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 115.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 115.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 114.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 114.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 113.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 113.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 113.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 112.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 112.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 112.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 112.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 111.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 111.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 110.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 110.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 109.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 109.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 109.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 108.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 108.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 107.3
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 107.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 107.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 107.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 106.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 106.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 106.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 106.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 106.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 105.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 105.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 105.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 104.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 104.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 104.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 103.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 103.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 103.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 103.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 103.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 103.0
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 102.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 102.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 101.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 101.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 101.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 99.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 99.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 99.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 99.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 99.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 98.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 98.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 97.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 97.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 96.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 96.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 96.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 95.7
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 95.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 94.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 94.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 94.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 93.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 93.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 93.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 93.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 93.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 92.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 92.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 92.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 91.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 91.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 91.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 89.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 89.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 89.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 88.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 88.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 88.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 86.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 86.5
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 85.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 85.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 85.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 84.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 84.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 84.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 84.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 84.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 83.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 83.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 83.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 81.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 81.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 80.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 80.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 80.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 79.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 78.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 78.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 78.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 76.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 76.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 76.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 76.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 75.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 75.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 74.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 74.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 73.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 70.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 70.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 70.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 69.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 69.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 69.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 69.6
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 69.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 66.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 65.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 63.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 62.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 60.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 60.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 58.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 56.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 56.1
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 54.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 53.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 50.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 50.6
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 49.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 44.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 42.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

198.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 198.1
FF:10181-103D1 60 years, female 206.5
FF:10159-103A6 76 years, female 189.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.3
Samples: 4

Max nTPM: 64.4
Min nTPM: 54.0
Sample A Female 59.3
Sample B Female 63.5
Sample C Male 54.0
Sample D Male 64.4
Ventral spinal cord
nTPM: 80.4
Samples: 4

Max nTPM: 95.2
Min nTPM: 69.8
Sample A Female 71.0
Sample B Female 85.7
Sample C Male 69.8
Sample D Male 95.2

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