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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

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  • CELL LINE

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  • EVOLUTION

  • RPS9
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS
MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:14.2 nTPM
GTEx:1083.5 nTPM
FANTOM5:164.5 Scaled Tags Per Million
Macaque:109.5 nTPM
Pig:414.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14.2
Sample id Sample description nTPM
Substantia nigra
nTPM: 14.2
2590 Female, age 75, unknown 29.5
2699 Male, age 18, unknown 23.8
2665 Male, age 74, both hemispheres 17.6
1941 Male, age 53, unknown 16.2
2409 Female, age 72, unknown 13.0
2583 Male, age 75, right hemisphere 10.3
1851 Male, age 51, unknown 9.4
1889 Female, age 72, unknown 9.3
2241 Male, age 72, unknown 8.0
1916 Female, age 42, unknown 4.5

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1083.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1083.5
Samples: 183

Max nTPM: 2809.3
Min nTPM: 397.0
Std nTPM: 414.9
Median nTPM: 1020.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2809.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2766.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2482.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2136.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2091.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2062.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2027.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1944.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1885.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1828.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1799.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1769.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1747.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1702.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 1702.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1668.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1641.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 1640.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 1594.8
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 1582.7
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 1562.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 1547.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1518.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1504.1
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 1503.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1493.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 1475.0
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 1469.9
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 1466.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 1446.4
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 1427.2
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 1421.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1419.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 1418.3
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 1408.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1390.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1388.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 1381.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 1374.7
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 1364.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 1347.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1307.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 1291.1
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 1290.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1285.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 1277.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 1254.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 1251.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 1244.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 1243.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 1240.7
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 1235.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1233.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 1227.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 1225.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 1219.2
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 1216.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 1201.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 1199.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1192.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1182.4
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 1178.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 1174.6
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 1173.9
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1172.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1155.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 1154.6
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 1140.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1139.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1132.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 1116.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 1104.9
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 1101.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 1099.7
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 1098.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 1095.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 1093.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 1082.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 1079.8
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 1077.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1072.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1068.0
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 1066.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 1065.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 1063.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 1060.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1036.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 1033.7
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1033.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1021.2
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 1020.9
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 1020.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 1013.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 1011.7
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 1007.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1003.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 997.9
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 994.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 979.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 976.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 969.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 964.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 955.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 951.7
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 948.1
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 942.5
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 933.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 922.9
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 920.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 915.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 912.9
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 896.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 883.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 883.0
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 881.8
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 881.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 881.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 876.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 875.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 865.9
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 863.9
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 863.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 857.7
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 856.9
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 847.6
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 845.2
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 843.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 831.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 827.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 820.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 816.8
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 806.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 790.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 790.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 790.1
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 789.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 788.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 784.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 778.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 771.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 770.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 767.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 764.9
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 760.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 756.3
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 754.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 735.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 722.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 722.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 717.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 708.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 707.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 702.7
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 698.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 696.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 692.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 686.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 684.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 667.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 665.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 658.6
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 651.1
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 649.8
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 649.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 647.6
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 639.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 636.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 634.7
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 614.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 612.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 611.1
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 608.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 607.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 582.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 582.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 580.7
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 573.4
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 544.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 509.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 452.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 447.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 428.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 397.0
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 164.5
FF:10158-103A5 76 years, female 164.5

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 109.5
Samples: 1

Max nTPM: 109.5
Min nTPM: 109.5
Sample A 109.5

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

414.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 414.3
Samples: 3

Max nTPM: 583.1
Min nTPM: 287.2
Sample A Female 583.1
Sample B Female 372.7
Sample C Male 287.2

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