MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.1 nTPM
HPA Brain:53.1 nTPM
GTEx:28.1 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:82.0 nTPM
Mouse:148.8 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.6
1870 Female, age 42, unknown 47.8
2586 Male, age 75, left hemisphere 46.4
1827 Male, age 72, unknown 44.4
2666 Male, age 74, left hemisphere 40.9
2219 Male, age 76, both hemispheres 39.8
2411 Female, age 72, unknown 39.1
1833 Male, age 53, unknown 36.6
1830 Male, age 51, unknown 33.0
2828 Female, age 72, unknown 33.0
2019 Male, age 18, unknown 15.3
Dorsal raphe nucleus
nTPM: 39.9
2298 Female, age 72, unknown 47.2
2016 Female, age 72, unknown 45.2
2047 Male, age 72, unknown 42.3
1828 Male, age 53, unknown 36.4
2750 Male, age 76, both hemispheres 28.4
Inferior colliculus
nTPM: 46.9
2097 Female, age 72, unknown 50.2
2849 Male, age 72, unknown 49.9
1848 Female, age 42, unknown 47.7
1890 Male, age 53, unknown 39.6
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Periaquaductal grey, anterior
nTPM: 50.1
1947 Male, age 18, unknown 65.7
1795 Male, age 51, unknown 52.8
2502 Female, age 75, unknown 31.7
Periaquaductal grey, dorsal
nTPM: 53.1
1840 Male, age 53, unknown 79.1
1831 Male, age 72, unknown 51.3
2850 Male, age 76, both hemispheres 41.5
2464 Female, age 72, unknown 40.3
Periaquaductal grey, lateral
nTPM: 43.3
2053 Male, age 18, unknown 61.3
2140 Male, age 76, both hemispheres 37.5
2272 Male, age 74, both hemispheres 31.2
Pretectal area
nTPM: 40.4
2224 Female, age 72, unknown 64.2
2825 Male, age 18, unknown 55.6
2407 Male, age 75, both hemispheres 42.5
2316 Male, age 76, right hemisphere 42.3
2667 Female, age 75, unknown 41.7
2273 Male, age 74, both hemispheres 40.7
1816 Male, age 51, unknown 36.3
1944 Female, age 72, unknown 34.1
1815 Male, age 53, unknown 31.3
1817 Female, age 42, unknown 30.7
2007 Male, age 72, unknown 24.8
Red nucleus
nTPM: 24.6
2725 Female, age 75, unknown 35.9
2584 Male, age 75, left hemisphere 29.1
2503 Female, age 72, unknown 29.0
1821 Female, age 72, unknown 28.1
1954 Female, age 42, unknown 26.8
2227 Male, age 72, unknown 26.3
2588 Male, age 74, left hemisphere 24.7
2769 Male, age 72, unknown 24.4
1865 Male, age 51, unknown 18.4
1904 Male, age 53, unknown 18.1
2823 Male, age 76, right hemisphere 17.9
2785 Male, age 18, unknown 16.1
Substantia nigra
nTPM: 42.6
2241 Male, age 72, unknown 57.3
2699 Male, age 18, unknown 48.6
2583 Male, age 75, right hemisphere 45.1
1851 Male, age 51, unknown 44.7
1916 Female, age 42, unknown 40.9
2409 Female, age 72, unknown 40.7
2590 Female, age 75, unknown 40.7
1889 Female, age 72, unknown 37.6
2665 Male, age 74, both hemispheres 36.1
1941 Male, age 53, unknown 34.8
Superior colliculus
nTPM: 38.6
1796 Male, age 53, unknown 53.6
2664 Male, age 75, both hemispheres 50.8
1839 Male, age 51, unknown 46.1
2261 Male, age 18, unknown 38.9
2668 Female, age 75, unknown 37.2
2587 Male, age 74, left hemisphere 35.6
1895 Male, age 76, right hemisphere 35.3
2087 Female, age 72, unknown 33.6
1913 Female, age 42, unknown 27.8
1995 Male, age 72, unknown 27.4
Ventral tegmental area
nTPM: 44.4
1915 Female, age 42, unknown 51.9
2021 Male, age 53, unknown 49.7
1942 Male, age 51, unknown 47.0
2223 Female, age 72, unknown 45.0
2410 Female, age 72, unknown 37.4
2218 Male, age 76, both hemispheres 35.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.1
Samples: 183

Max nTPM: 113.6
Min nTPM: 6.2
Std nTPM: 13.4
Median nTPM: 26.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 113.6
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 89.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 70.8
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 66.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 61.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 60.5
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 60.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 60.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 58.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 51.8
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 48.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 73.4
Samples: 4

Max nTPM: 93.0
Min nTPM: 40.2
Sample A Female 92.8
Sample B Female 67.6
Sample C Male 93.0
Sample D Male 40.2
Midbrain
nTPM: 82.0
Samples: 4

Max nTPM: 113.2
Min nTPM: 43.5
Sample A Female 43.5
Sample B Female 82.7
Sample C Male 88.5
Sample D Male 113.2
Periaqueductal gray
nTPM: 68.1
Samples: 3

Max nTPM: 81.4
Min nTPM: 57.1
Sample B Female 65.7
Sample C Male 81.4
Sample D Male 57.1
Superior colliculi
nTPM: 69.3
Samples: 4

Max nTPM: 78.6
Min nTPM: 48.4
Sample A Female 78.6
Sample B Female 48.4
Sample C Male 74.9
Sample D Male 75.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 148.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 148.8
Samples: 4

Max nTPM: 154.2
Min nTPM: 143.5
Sample A Male 150.6
Sample B Male 154.2
Sample C Female 143.5
Sample D Female 147.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
805 Antisense, RP_Baylor_102966, Mouse strain C57BL/6J (56 days, male) 2.9
806 Antisense, RP_Baylor_102966, Mouse strain C57BL/6J (56 days, male) 1.2
807 Sense, RPS_Baylor_37024, Mouse strain C57BL/6J (56 days, male) 0.3

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