MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.0 nTPM
HPA Brain:14.7 nTPM
GTEx:34.0 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:50.1 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 14.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.9
1827 Male, age 72, unknown 15.9
2019 Male, age 18, unknown 15.4
2586 Male, age 75, left hemisphere 15.1
2411 Female, age 72, unknown 14.2
1870 Female, age 42, unknown 13.9
1833 Male, age 53, unknown 12.3
1830 Male, age 51, unknown 11.5
2666 Male, age 74, left hemisphere 10.6
2828 Female, age 72, unknown 10.1
2219 Male, age 76, both hemispheres 9.9
Dorsal raphe nucleus
nTPM: 12.9
2298 Female, age 72, unknown 15.1
1828 Male, age 53, unknown 13.1
2016 Female, age 72, unknown 12.2
2750 Male, age 76, both hemispheres 12.2
2047 Male, age 72, unknown 11.8
Inferior colliculus
nTPM: 13.8
2097 Female, age 72, unknown 18.7
1890 Male, age 53, unknown 13.7
1848 Female, age 42, unknown 12.2
2849 Male, age 72, unknown 10.7
Median raphe nucleus
nTPM: 10.7
2220 Male, age 76, midline 10.7
Periaquaductal grey, anterior
nTPM: 13.7
1947 Male, age 18, unknown 15.2
2502 Female, age 75, unknown 13.7
1795 Male, age 51, unknown 12.1
Periaquaductal grey, dorsal
nTPM: 12.6
1840 Male, age 53, unknown 13.4
2850 Male, age 76, both hemispheres 13.1
1831 Male, age 72, unknown 12.8
2464 Female, age 72, unknown 11.3
Periaquaductal grey, lateral
nTPM: 10.6
2140 Male, age 76, both hemispheres 11.3
2053 Male, age 18, unknown 11.0
2272 Male, age 74, both hemispheres 9.4
Pretectal area
nTPM: 14.7
2007 Male, age 72, unknown 19.5
1816 Male, age 51, unknown 18.8
1944 Female, age 72, unknown 16.8
1815 Male, age 53, unknown 16.4
2667 Female, age 75, unknown 16.1
1817 Female, age 42, unknown 16.0
2316 Male, age 76, right hemisphere 13.9
2224 Female, age 72, unknown 13.0
2825 Male, age 18, unknown 11.8
2273 Male, age 74, both hemispheres 10.1
2407 Male, age 75, both hemispheres 9.4
Red nucleus
nTPM: 12.7
1821 Female, age 72, unknown 17.5
1865 Male, age 51, unknown 13.8
2588 Male, age 74, left hemisphere 12.9
1904 Male, age 53, unknown 12.8
2785 Male, age 18, unknown 12.8
1954 Female, age 42, unknown 12.7
2503 Female, age 72, unknown 12.6
2769 Male, age 72, unknown 11.8
2823 Male, age 76, right hemisphere 11.8
2725 Female, age 75, unknown 11.5
2584 Male, age 75, left hemisphere 11.4
2227 Male, age 72, unknown 10.8
Substantia nigra
nTPM: 14.0
1916 Female, age 42, unknown 17.1
1889 Female, age 72, unknown 16.0
2665 Male, age 74, both hemispheres 15.6
2409 Female, age 72, unknown 15.4
2241 Male, age 72, unknown 14.5
1851 Male, age 51, unknown 14.4
1941 Male, age 53, unknown 13.5
2699 Male, age 18, unknown 12.0
2590 Female, age 75, unknown 11.0
2583 Male, age 75, right hemisphere 10.1
Superior colliculus
nTPM: 13.4
2668 Female, age 75, unknown 16.1
1895 Male, age 76, right hemisphere 15.4
1913 Female, age 42, unknown 14.0
2587 Male, age 74, left hemisphere 13.6
2261 Male, age 18, unknown 13.2
1839 Male, age 51, unknown 13.1
1796 Male, age 53, unknown 12.8
1995 Male, age 72, unknown 12.5
2087 Female, age 72, unknown 12.3
2664 Male, age 75, both hemispheres 11.2
Ventral tegmental area
nTPM: 13.2
2410 Female, age 72, unknown 16.6
1915 Female, age 42, unknown 14.7
2223 Female, age 72, unknown 13.0
2218 Male, age 76, both hemispheres 12.7
2021 Male, age 53, unknown 11.3
1942 Male, age 51, unknown 11.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.0
Samples: 183

Max nTPM: 56.8
Min nTPM: 19.9
Std nTPM: 6.8
Median nTPM: 32.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 56.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 56.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 54.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 54.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 49.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 48.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 48.2
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 47.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 47.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 47.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 45.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.5
FF:10158-103A5 76 years, female 36.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.3
Samples: 4

Max nTPM: 42.4
Min nTPM: 28.9
Sample A Female 42.4
Sample B Female 29.4
Sample C Male 36.4
Sample D Male 28.9
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 46.4
Min nTPM: 29.9
Sample A Female 29.9
Sample B Female 37.0
Sample C Male 44.1
Sample D Male 46.4
Periaqueductal gray
nTPM: 32.0
Samples: 3

Max nTPM: 33.3
Min nTPM: 30.6
Sample B Female 32.2
Sample C Male 33.3
Sample D Male 30.6
Superior colliculi
nTPM: 42.8
Samples: 4

Max nTPM: 52.3
Min nTPM: 35.7
Sample A Female 44.9
Sample B Female 35.7
Sample C Male 52.3
Sample D Male 38.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 50.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.0
Samples: 4

Max nTPM: 57.3
Min nTPM: 42.8
Sample A Male 50.9
Sample B Male 42.8
Sample C Female 49.1
Sample D Female 57.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
77620409 Antisense, RP_070205_01_G05, Mouse strain C57BL/6J (56 days, male) 0.9
77414913 Antisense, RP_070205_01_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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