MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA Brain:20.3 nTPM
GTEx:24.5 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:19.4 nTPM
Mouse:39.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
2411 Female, age 72, unknown 19.0
1827 Male, age 72, unknown 18.0
1870 Female, age 42, unknown 16.8
2019 Male, age 18, unknown 15.8
1833 Male, age 53, unknown 15.5
2219 Male, age 76, both hemispheres 13.5
2586 Male, age 75, left hemisphere 12.9
1830 Male, age 51, unknown 12.5
2828 Female, age 72, unknown 12.2
2666 Male, age 74, left hemisphere 8.2
Dorsal raphe nucleus
nTPM: 15.7
2298 Female, age 72, unknown 19.8
2750 Male, age 76, both hemispheres 17.3
2047 Male, age 72, unknown 15.3
1828 Male, age 53, unknown 14.3
2016 Female, age 72, unknown 12.0
Inferior colliculus
nTPM: 17.0
2097 Female, age 72, unknown 20.4
1848 Female, age 42, unknown 18.6
1890 Male, age 53, unknown 15.3
2849 Male, age 72, unknown 13.6
Median raphe nucleus
nTPM: 20.3
2220 Male, age 76, midline 20.3
Periaquaductal grey, anterior
nTPM: 16.9
1947 Male, age 18, unknown 20.9
1795 Male, age 51, unknown 15.9
2502 Female, age 75, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 16.2
1840 Male, age 53, unknown 18.5
2850 Male, age 76, both hemispheres 16.2
2464 Female, age 72, unknown 15.8
1831 Male, age 72, unknown 14.3
Periaquaductal grey, lateral
nTPM: 14.8
2272 Male, age 74, both hemispheres 17.5
2053 Male, age 18, unknown 15.2
2140 Male, age 76, both hemispheres 11.7
Pretectal area
nTPM: 18.8
1944 Female, age 72, unknown 25.8
1816 Male, age 51, unknown 24.4
1817 Female, age 42, unknown 23.8
2007 Male, age 72, unknown 22.2
1815 Male, age 53, unknown 20.3
2224 Female, age 72, unknown 19.2
2273 Male, age 74, both hemispheres 16.9
2407 Male, age 75, both hemispheres 15.1
2667 Female, age 75, unknown 14.5
2825 Male, age 18, unknown 14.2
2316 Male, age 76, right hemisphere 10.1
Red nucleus
nTPM: 13.4
1821 Female, age 72, unknown 19.1
2725 Female, age 75, unknown 17.2
2785 Male, age 18, unknown 15.4
2823 Male, age 76, right hemisphere 14.4
2584 Male, age 75, left hemisphere 14.1
1865 Male, age 51, unknown 13.4
2503 Female, age 72, unknown 12.5
1904 Male, age 53, unknown 12.3
2769 Male, age 72, unknown 11.7
1954 Female, age 42, unknown 11.5
2227 Male, age 72, unknown 11.5
2588 Male, age 74, left hemisphere 7.7
Substantia nigra
nTPM: 19.7
2241 Male, age 72, unknown 27.1
1916 Female, age 42, unknown 24.8
1889 Female, age 72, unknown 22.2
1851 Male, age 51, unknown 21.7
2665 Male, age 74, both hemispheres 19.3
2409 Female, age 72, unknown 19.2
1941 Male, age 53, unknown 19.1
2590 Female, age 75, unknown 18.9
2699 Male, age 18, unknown 13.9
2583 Male, age 75, right hemisphere 11.0
Superior colliculus
nTPM: 15.9
2087 Female, age 72, unknown 19.2
2668 Female, age 75, unknown 18.5
1895 Male, age 76, right hemisphere 18.4
1796 Male, age 53, unknown 17.5
2587 Male, age 74, left hemisphere 16.8
2261 Male, age 18, unknown 16.1
1839 Male, age 51, unknown 15.2
1913 Female, age 42, unknown 13.8
1995 Male, age 72, unknown 12.7
2664 Male, age 75, both hemispheres 11.0
Ventral tegmental area
nTPM: 17.1
2410 Female, age 72, unknown 24.1
2218 Male, age 76, both hemispheres 20.9
1915 Female, age 42, unknown 17.0
2223 Female, age 72, unknown 14.2
2021 Male, age 53, unknown 13.5
1942 Male, age 51, unknown 12.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.5
Samples: 183

Max nTPM: 48.5
Min nTPM: 5.6
Std nTPM: 7.0
Median nTPM: 23.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 48.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 43.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 39.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 38.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 38.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 37.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 37.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 37.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 36.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 68.5
FF:10158-103A5 76 years, female 68.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 23.1
Min nTPM: 17.2
Sample A Female 23.1
Sample B Female 17.2
Sample C Male 17.8
Sample D Male 17.4
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 20.8
Min nTPM: 17.2
Sample A Female 17.2
Sample B Female 18.3
Sample C Male 20.0
Sample D Male 20.8
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 17.3
Min nTPM: 16.0
Sample B Female 16.0
Sample C Male 17.3
Sample D Male 16.1
Superior colliculi
nTPM: 19.4
Samples: 4

Max nTPM: 21.7
Min nTPM: 18.1
Sample A Female 21.7
Sample B Female 18.1
Sample C Male 19.2
Sample D Male 18.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.1
Samples: 4

Max nTPM: 40.5
Min nTPM: 37.9
Sample A Male 38.8
Sample B Male 39.0
Sample C Female 40.5
Sample D Female 37.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70445377 Antisense, RP_050614_03_F08, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo